BAC Information

Click to search

BAC

Clone NameMSMg01-374F24
Chromosome3 (Build37)
Map Location 127,295,799 - 127,296,154
singlet/doubletsinglet
Overlap gene4930422G04Rik
Upstream geneCamk2d, Ank2, LOC100043749, LOC100043361, LOC100043364, Larp7
Downstream geneNeurog2, Alpk1, T2bp, BC002199, 5730508B09Rik, LOC100043382, EG668828
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374F24.T7 (MSMg01no374_f24.b1)MSMg01-374F24.TJ (MSMg01no374_f24.g1)
ACCAG480186AG480187
length792759
length of high quality
(start - end)		409 (50 - 458)451 (57 - 507)
definitionCHROMAT_FILE: MSMg01no374_f24.b1 PHD_FILE: MSMg01no374_f24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:35 2005CHROMAT_FILE: MSMg01no374_f24.g1 PHD_FILE: MSMg01no374_f24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNAATCATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAACTCACCCTCCTTGATTGCACTCAGCTAATTAATATCTAG
GCAGACAACACTAGATGTGATCTGGCGCTTAAAGAACTCTGTACCCAATA
GCTCAACAATATATATTTCTCATGCACTAAGCCAGTAAGAAAATCTTGAA
AGTTTGGATGGGGTGGTGCAGGTCTGTAATCCCATGACTCAGAAGGCTAA
AAAGGTACATCGCGGCCTCAATATATAGCGAGAACCTGTCTTAAAACAAA
AATAAGGACTCTTACTAATTTTAAAAAGTGATAGCATAGGGGCTGGAGAT
ATCGCTCAGTGATTAAGAGCATGAACAGCCAAAGGTCCTGAGTTCAAATC
CCAGCAACCACATGGTGGCTCACAACCATCCGTAATGAGATTTGATGCCC
TCTTCTGGTGTGTCTGATAACAGCTACAGTGCACTTACATATAATAATCA
AAAAATCTTAAATAAAAAGTCGATAGATAAAAACTATAATCCTTGGCCCA
TAAAACCCAAANGGCCACAAATTAGTAGTACCAGGATAAAAAACAACCGT
CCTCCAACGCCGTACTTAAAAAGAATGGTATTAACNCTAAAGGGTGGAGA
AGACCTTCCACGGAATCCCCCCAAAAAACACGGAAGCGCAAACCCTTTCC
GAAGGGGGGGAAAGNATATCAACGGTGGGAACCAAACGGGGGGTAAGGGG
GGACAAAAAAACCGCAAACGGGGGCATATAAAGACCAAGGAN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCTGTATACTTATAAAATATACAAAATTCTGGGTAATAAAAGACA
TCTGGCCAATTCTTAAAAAAATATGGAAATCATAGAAAATATTGTTTTTA
GCTATCAATTAAATGAAGCCAGAAATGAAAAGCATGATAACAATAATAGA
AAAATAATAAAAAATTCCAATGACAGACAGACAGACAGACAGACAGACAG
AAAGACACACACACACATCAAGGAAGAGTTAATGAAGATTTGTCATGAGG
CTCTACTCTTCTCTGTGTATTTTTAGGCAATTAATAGATGCTGGAAGAAG
TGGTGTCTCTTCCTTCAATGGTAAAGCTACAGTTAAGTAGTATGTGTTCC
AGTGAGTGACGCCTCACTCATGTTTATGTAAACATATAATTAAACTCAGT
GGGTAAAAAATAAAGATGTTAACATGGAGGAGCCTGGTGAAAGAAAGGAT
TTTTGCAGTTGAGAAAAGAGATAAAAGCAGGTATTGAGAGTGAAAAATCC
ATATTCCCTAGACTAAAATCCTAAAAGAATATGAAAATGTTCTCGAAAAA
ATTATATTTANAAAAGGAATATGTATTTATTGTAATTTTTGGAAAACCAA
AGTTAGAAATTTTTGTTATCATACAAAATATTCCCGTGTAAAAACCCAAA
ATCATAAACCCCACCTTTTGTTTCAAAAATGGGGGTATCTTTTTTTTAAA
AAAAAATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_f24.b1 MSMg01no374_f24.b1 CHROMAT_FILE:
MSMg01no374_f24.b1 PHD_FILE: MSMg01no374_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:35 2005
         (409 letters)



>mm_chr3_127295799_127296607
          Length = 809

 Score =  627 bits (324), Expect = 0.0
 Identities = 348/356 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaactcaccctccttgattgcactcagctaattaatatctaggcagacaacacta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gaattcaactcaccctccttgattgcactcagctaattaatatctaggcagacaacacta 297

                                                                       
Query: 65  gatgtgatctggcgcttaaagaactctgtacccaatagctcaacaatatatatttctcat 124
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 gatgtgatctggcacttaaagaactctgtacccaatagctcaacaatatatatttctcat 237

                                                                       
Query: 125 gcactaagccagtaagaaaatcttgaaagtttggatggggtggtgcaggtctgtaatccc 184
           |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 236 gcactaagccagtaagaaaaccttgaaagtttggatagggtggtgcaggtctgtaatccc 177

                                                                       
Query: 185 atgactcagaaggctaaaaaggtacatcgcggcctcaatatatagcgagaacctgtctta 244
           ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 176 atgactcagaaggctaaaaaggtacattgtggcctcaatatatagcgagaacctgtctta 117

                                                                       
Query: 245 aaacaaaaataaggactcttactaattttaaaaagtgatagcataggggctggagatatc 304
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 116 aaacaaaaataaagactcttactaattttaaaaagtgatagcataggggctggagatatg 57

                                                                   
Query: 305 gctcagtgattaagagcatgaacagccaaaggtcctgagttcaaatcccagcaacc 360
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 56  gctcagtgattaagagcatggacagccaaaggtcctgagttcaaatcccagcaacc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space:   320000
Effective search space used:   320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |