Query= MSMg01no374_j01.b1 MSMg01no374_j01.b1 CHROMAT_FILE:
MSMg01no374_j01.b1 PHD_FILE: MSMg01no374_j01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:50 2005
(498 letters)
>mm_chr3_146935590_146936487
Length = 898
Score = 942 bits (487), Expect = 0.0
Identities = 493/495 (99%)
Strand = Plus / Plus
Query: 4 ggaattcagcccagggcaaggcagctatgccttaggccctcatcactaagttatcaggtg 63
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagccgagggcaaggcagctatgccttaggccctcatcactaagttatcaggtg 263
Query: 64 gtgttatgaatggattcatctcatagatctgaactccatggagcttcttagccatctgtc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtgttatgaatggattcatctcatagatctgaactccatggagcttcttagccatctgtc 323
Query: 124 agaataacagagtggggctccttttgtaatggaccttaaagtagaaattttcatatagtt 183
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 324 agaataacagagtggggctccttttgtaatggaccttaaagtagaaattttcatatagct 383
Query: 184 tattgggaaaaggaatagaaggggaataagggagaaggcagaaatgcatgatgggagtat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tattgggaaaaggaatagaaggggaataagggagaaggcagaaatgcatgatgggagtat 443
Query: 244 ctgaggtgtggtaaagttgcaacagaaacctcagcccaatcatggagagctcttgatttt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctgaggtgtggtaaagttgcaacagaaacctcagcccaatcatggagagctcttgatttt 503
Query: 304 gagctgccaagcagtgttgctccaaactgggttaggatttggtcacatccatcagccaat 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gagctgccaagcagtgttgctccaaactgggttaggatttggtcacatccatcagccaat 563
Query: 364 accagttggcccgagaagagtgtaacttgtaaggggaccccttctagtaggtttctccac 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 accagttggcccgagaagagtgtaacttgtaaggggaccccttctagtaggtttctccac 623
Query: 424 tcttatacagtccatgagacaaattcagaggcaccagtgagatactctgtacgcatcttg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tcttatacagtccatgagacaaattcagaggcaccagtgagatactctgtacgcatcttg 683
Query: 484 atatggcaaccttgg 498
|||||||||||||||
Sbjct: 684 atatggcaaccttgg 698
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space: 433344
Effective search space used: 433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no374_j01.g1 MSMg01no374_j01.g1 CHROMAT_FILE:
MSMg01no374_j01.g1 PHD_FILE: MSMg01no374_j01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:50 2005
(483 letters)
>mm_chr3_147108492_147109375
Length = 884
Score = 913 bits (472), Expect = 0.0
Identities = 481/484 (99%), Gaps = 1/484 (0%)
Strand = Plus / Minus
Query: 1 tttctttcctaaccgacgttttgtggttaaacagatgaattccagatgtgagaagaatcg 60
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tttctttcctaaccgacattttgtggttaaacagatgaattccagatgtgagaagaatca 625
Query: 61 ctcacattcataaggaatgcgatcctgactcattaagggaaagatgccattgctttctgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctcacattcataaggaatgcgatcctgactcattaagggaaagatgccattgctttctgg 565
Query: 121 ctccgaatgcgagattgcatttcctagacatgagagggaatagtgaaacttaaccagagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctccgaatgcgagattgcatttcctagacatgagagggaatagtgaaacttaaccagagc 505
Query: 181 cataagggatacttcctgggtcaccaagaaggtcatcacatgagcataccgtttgatctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cataagggatacttcctgggtcaccaagaaggtcatcacatgagcataccgtttgatctc 445
Query: 241 ctgctggggtccatatgcctcattttcatgcagtcctgtgggcatcttccacgtcacacc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctgctggggtccatatgcctcattttcatgcagtcctgtgggcatcttccacgtcacacc 385
Query: 301 ttccctgctgcttaggtagaccaccgttggcacctgaacgacttatctcactgatctcat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttccctgctgcttaggtagaccaccgttggcacctgaacgacttatctcactgatctcat 325
Query: 361 cctacggatgagcaatagaatcctagtttaaagtattgaactaagataaagacccaagag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cctacggatgagcaatagaatcctagtttaaagtattgaactaagataaagacccaagag 265
Query: 421 gagggaggaaaggtgtgtgcatgcctagcacccaccaggaagtgattac-gtcctccagc 479
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 264 gagggaggaaaggtgtgtgcatgcctagcacccaccaggaagtgattacggtcctccagc 205
Query: 480 aagc 483
||||
Sbjct: 204 aagc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 884
Length adjustment: 10
Effective length of query: 473
Effective length of database: 874
Effective search space: 413402
Effective search space used: 413402
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
