Query= MSMg01no375_a12.b1 MSMg01no375_a12.b1 CHROMAT_FILE:
MSMg01no375_a12.b1 PHD_FILE: MSMg01no375_a12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:29 2005
(363 letters)
>mm_chr3_152262380_152263142
Length = 763
Score = 648 bits (335), Expect = 0.0
Identities = 356/363 (98%)
Strand = Plus / Minus
Query: 1 gttgcggcgcgatataggctgctgtgtgcagttgctggctctctggtgcagccagtgcag 60
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gttgcggtgggatataggctgctgtgtgcagttgctggctctctggtgcagccagtgcag 504
Query: 61 tggaagtgccccgtgagagctacaaattacatgctgaactgatgtgtaattaatgagtgg 120
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tggaagtgcacagtgagagctacaaattacatgctgaactgatgtgtaattaatgagtgg 444
Query: 121 gacggacggcatgaacacactctcagtgtgagcaggagttgtttaagcctcattcatgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gacggacggcatgaacacactctcagtgtgagcaggagttgtttaagcctcattcatgtg 384
Query: 181 ggttgaataagctcttttgctaatgtttcaaacacaaagctcaaaaaaattcatggtttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ggttgaataagctcttttgctaatgtttcaaacacaaagctcaaaaaaattcatggtttt 324
Query: 241 cctcatggtctgacctctaaccattaccaattcacaagttatttgaaggtgttggacacc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cctcatggtctgacctctaaccattaccaattcacaagttatttgaaggtgttggacacc 264
Query: 301 atgagagatttctcagaaaataccagagcgcggcttccaaacaatttccacgattgctgt 360
|||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||
Sbjct: 263 atgagagatttctcagaaaataccagagtgtggcttcaaaacaatttccacgattgctgt 204
Query: 361 caa 363
|||
Sbjct: 203 caa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 763
Length adjustment: 9
Effective length of query: 354
Effective length of database: 754
Effective search space: 266916
Effective search space used: 266916
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no375_a12.g1 MSMg01no375_a12.g1 CHROMAT_FILE:
MSMg01no375_a12.g1 PHD_FILE: MSMg01no375_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:29 2005
(280 letters)
>mm_chr3_152040698_152041378
Length = 681
Score = 489 bits (253), Expect = e-143
Identities = 274/281 (97%), Gaps = 1/281 (0%)
Strand = Plus / Plus
Query: 1 ttataaacaaacaaacaagcatgcaaataacataatggttttaaaccc-cgtgtagtggt 59
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 201 ttataaacaaacaaacaagcatgcaaataaaataatggttttaaacccacgtgtagtggt 260
Query: 60 aagtggtatatgcggatattatcagtactgaggtgggaggactatacatttgagcctagc 119
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagtggtatatgctgatattatcagtactgaggtgggaggactatacatttgagcctagc 320
Query: 120 ctgggttttataacaagacgttattgtcttcaaggcaaaataataagaataataagaata 179
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 ctgggttttataacaagacgttattgtcttcaaggcaaaataaaaagaataataagaata 380
Query: 180 tatgaacttgagttacatatcttgaagaagatttggattctacactatgagttttactta 239
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatgaacttgagttacagatcttgaagaagatttggattctacactatgagttttactta 440
Query: 240 atatctgcatattataaacatattgtagacctactgtagac 280
|||||||||||||||||||||||||||||| || |||||||
Sbjct: 441 atatctgcatattataaacatattgtagacatattgtagac 481
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 681
Length adjustment: 9
Effective length of query: 271
Effective length of database: 672
Effective search space: 182112
Effective search space used: 182112
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
