Query= MSMg01no376_a16.b1 MSMg01no376_a16.b1 CHROMAT_FILE:
MSMg01no376_a16.b1 PHD_FILE: MSMg01no376_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:50 2005
(485 letters)
>mm_chr3_39570784_39571668
Length = 885
Score = 810 bits (419), Expect = 0.0
Identities = 460/481 (95%), Gaps = 12/481 (2%)
Strand = Plus / Minus
Query: 5 gaattctcccaaaatgtacgtgtgggatgcagaccatgaaatgactgtagacaatcaagc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gaattctcccaaaatgtacgtgtgggatgcagaccatgaaatgactgtagacaatcaagc 505
Query: 65 atagaaacatcctttattaaaatttactaaggaagcagccacttgggatcctctgaggca 124
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atagaaacatcctttatcaaaatttactaaggaagcagccacttgggatcctctgaggca 445
Query: 125 atttttgtgatgtatttaatacagacatcattgttagctgattatactttttaggaatct 184
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 444 atttttgtgatgtatttaatacagacatccttgttagctgattatactttttaggaatct 385
Query: 185 catgaaaccataccgagtcaccagagaaatagtctaacctgtgtagataaatgtactgta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 catgaaaccataccgagtcaccagagaaatagtctaacctgtgtagataaatgtactgta 325
Query: 245 ccaacatgaatcaaaagggtcatgccttaaaccaatttttaaaatttcaaagttctaaaa 304
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ccaacacgaatcaaaagggtcatgccttaaaccaatttttaaaatttcaaagttctaaaa 265
Query: 305 attcttacattgacattatataggaataaacatttgttggtttttacaatggcatattca 364
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 attcttacattgacattgtataggaataaacatttgttggtttttacaatggcatattca 205
Query: 365 tatctatctgtctatctgtctgtctgtctatctatctatctatctatctatctatctatc 424
||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 204 tatctatctgtctgtctgtctatctatctatctatctatctatctatctatctatctatc 145
Query: 425 tatctatctatctatctatctacctatctatctctccaccagttctcacattttaacaga 484
|||||||||| ||| |||||||| |||||||||||||||||||||||||
Sbjct: 144 tatctatcta------------cctgtctatctccccaccagttctcacattttaacaga 97
Query: 485 a 485
|
Sbjct: 96 a 96
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space: 415625
Effective search space used: 415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no376_a16.g1 MSMg01no376_a16.g1 CHROMAT_FILE:
MSMg01no376_a16.g1 PHD_FILE: MSMg01no376_a16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:50 2005
(519 letters)
>mm_chr3_39481763_39482680
Length = 918
Score = 897 bits (464), Expect = 0.0
Identities = 506/520 (97%), Gaps = 3/520 (0%)
Strand = Plus / Plus
Query: 1 caaatgaatgatgtatctaccccaactc-gacaaacacatgcacatgatggtggaataga 59
||||| |||||||||||||||||||||| | |||||||||||||| ||||||||||||||
Sbjct: 201 caaataaatgatgtatctaccccaactctg-caaacacatgcacacgatggtggaataga 259
Query: 60 ttccaagtgctttggttagaactgcaaagtcactgttacattcactgcacagacaggcaa 119
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ttccaagtgctttagttagaactgcaaagtcactgttacattcactgcacagacaggcaa 319
Query: 120 ttctaaaagtaattgcagtaaagagaactctgaacttccctcaacctgctcataaagatt 179
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 320 ttctaaaagtaattgcagtaaagagaactctaaacttccctcaacctactcataaagatt 379
Query: 180 gtatccatcatctctgccctgtggtcagtttgtccacacgacatgacaattatacagtta 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gtatccatcatctctgccctgtggtcagtttgtccacacgacatgacaattatacagtta 439
Query: 240 cacataattcggcgtctttcctcctataagaaaaagaccttggcttaatgatgaaaaata 299
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cacataattcggtgtctttcctcctataagaaaaagaccttggcttaatgatgaaaaata 499
Query: 300 taatttagagtgattctaaagatagttgtgcaatacttctcaaaaccaccagtgtcatca 359
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 500 taatttagagtgattctaaagatagttgtgcaatagttctcaaaaccaccagtgtcatca 559
Query: 360 aacacaagacaggatgaagaattaactgcaatataaggaacatagaaaccagaaggggac 419
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 560 aacacaagacaggatgaagaattaactgcaatataaggaacttagaaaccagaaggggat 619
Query: 420 atcaggttaaagtcaagaaaaatgttaaaacacatanggggagtttgttcacaacaacat 479
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 620 atcaggttaaagtcaagaaaaatgataaaacacata-ggggagtttgttcacaacaacat 678
Query: 480 gcaatcattaattctgggacaagcctaacatgcacactgt 519
||||||||||||||||||||||||||| ||||||||||||
Sbjct: 679 gcaatcattaattctgggacaagcctaccatgcacactgt 718
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 918
Length adjustment: 10
Effective length of query: 509
Effective length of database: 908
Effective search space: 462172
Effective search space used: 462172
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
