Query= MSMg01no376_c08.b1 MSMg01no376_c08.b1 CHROMAT_FILE:
MSMg01no376_c08.b1 PHD_FILE: MSMg01no376_c08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:58 2005
(510 letters)
>mm_chr3_68809545_68810450
Length = 906
Score = 944 bits (488), Expect = 0.0
Identities = 500/506 (98%), Gaps = 4/506 (0%)
Strand = Plus / Plus
Query: 5 gaattcctccgtcctgggcgcgatggcaggcgcggctatgtttccccacgtagctggggc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctccgtcctgggcgcgatggcaggcgcggctatgtttccccacgtagctggggc 264
Query: 65 gtgggaaaacccgtcccgcccggttgccactgctgggttcctagtagccactttcctagg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtgggaaaacccgtcccgcccggttgccactgctgggttcctagtagccactttcctagg 324
Query: 125 gacccgctactggctagcggcgttggggaacgcggtggcggggtgggtcctgggcggagc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gacccgctactggctagcggcgttggggaacgcggtggcggggtgggtcctgggcggagc 384
Query: 185 ccgtcctgctgctgcggggcctgagcggcgagctgcgggccgacctgactcgggactgac 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccgtcctgctgctgcggggcctgagcggcgagctgcgggccgacctgactcgggact--- 441
Query: 245 tcttctgccgcagccaccatgcggcgtaagggcaccaagccctccactgcctgccaccag 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 -cttctgccgcagccaccatgcggcgtaagggcaccaagccctccactgcctgccaccag 500
Query: 305 gaggaagggccgccgccctcccaggacggtgcccacagcgacgaagagatggagcaaccg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaggaagggccgccgccctcccaggacggtgcccacagcgacgaagagatggagcaaccg 560
Query: 365 gccggcgaagcggagagcgctgcacccgcaagtgagtgacaggtcgggatccccgtgcgt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gccggcgaagcggagagcgctgcacccgcaagtgagtgacaggtcgggatccccgtgcgt 620
Query: 425 cggaagcctgcggagaccctctgagggtggcggggcgcaggcgacgacaggttgatttgg 484
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cggaagcctgtggagaccctctgagggtggcggggcgcaggcgacgacaggttgatttgg 680
Query: 485 gaagctccggaaagccgttctgtggt 510
||||||||||||||||||||| ||||
Sbjct: 681 gaagctccggaaagccgttctttggt 706
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 906
Length adjustment: 10
Effective length of query: 500
Effective length of database: 896
Effective search space: 448000
Effective search space used: 448000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no376_c08.g1 MSMg01no376_c08.g1 CHROMAT_FILE:
MSMg01no376_c08.g1 PHD_FILE: MSMg01no376_c08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:58 2005
(400 letters)
>mm_chr3_69008940_69009738
Length = 799
Score = 741 bits (383), Expect = 0.0
Identities = 395/399 (98%), Gaps = 3/399 (0%)
Strand = Plus / Minus
Query: 1 tggggaacatgagacag-aggtttttaaaaaggtcaggagttgtacagaaattgtaggtc 59
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 tggggaacatgagacagca-gtttttaaaaaggtcaggagttgtacagaaattgtaggtc 736
Query: 60 acagggaggggcttggagtttattctagattcttcttggaaggcactggacagtggtgag 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 acagggaggggcttggagtttattctagattcttcttggaaggcactggacagtggtgag 676
Query: 120 cagggaaaccccttgtgaggactatcctggctgctgtgtagcaagccagcagtggggcta 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 cagggaaaccccttgtgaggactatcctggctgctgtgtagcaagccagcagtggggcta 616
Query: 180 ggcaatgtggaggcaggggtctgggctgatgactctcaaagctgtcttccttggagatga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ggcaatgtggaggcaggggtctgggctgatgactctcaaagctgtcttccttggagatga 556
Query: 240 tgccataccagactagaggagcagggacaggaagtggaatctgatcagactcaaggctca 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tgccataccagactagaggagcagggacaggaagtggaatctgatcagactcaaggctca 496
Query: 300 aggtgtaaattgggaggactccagagggggagggggacttgctggataggggtgaaagat 359
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 aggtgtaaattaggaggactccagagggggagggggacttgctggataggggtgaaagat 436
Query: 360 ggaggcttcagatagcccttgagtttcgatttttatcta 398
||||||||||||||||||||||||||||| |||||||||
Sbjct: 435 ggaggcttcagatagcccttgagtttcga-ttttatcta 398
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 799
Length adjustment: 9
Effective length of query: 391
Effective length of database: 790
Effective search space: 308890
Effective search space used: 308890
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
