BAC Information

Click to search

BAC

Clone NameMSMg01-376D08
Chromosome3 (Build37)
Map Location 42,556,162 - 42,556,484
singlet/doubletsinglet
Overlap genenone
Upstream geneD3Ertd751e, LOC666031, LOC100039204
Downstream geneLOC100039219, LOC677788
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376D08.T7 (MSMg01no376_d08.b1)MSMg01-376D08.TJ (MSMg01no376_d08.g1)
ACCAG481580AG481581
length755737
length of high quality
(start - end)		323 (212 - 534)588 (74 - 661)
definitionCHROMAT_FILE: MSMg01no376_d08.b1 PHD_FILE: MSMg01no376_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:03 2005CHROMAT_FILE: MSMg01no376_d08.g1 PHD_FILE: MSMg01no376_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGATCACAATGCTTTACTTGGGCATGAGGATATTTTAGTTAATTACTT
TTTGCTAGGAATGCCATTGAAAATCAATCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTCTCTGCCT
CCTCTCTCTCTCCCTTTCTCCCTTCCTCCCTCCCTCAAATGTTAACATGC
ATAAGTAACAAAGGCTTTTCTCCCAAAAGATAAAGAAAAAGAAAGAATAT
GTCATATATTGTTGCACTGCTAATATCACTTGGTTTTGTCTTTGGAGATC
TGTAGCTACACCTAAATTAAAATCCATGTGATTAAAGCCATTCTAAAGCA
GATATATAATGTTTTCAACTTTAAATAAAAATTTATTCAGAGTATAGAAG
AAAAGTAACCCAATCACAAAGGAACTCACACAATATGTACTCACTGATAA
GTGGATATTAGCCCAGAAAGTTAGGATACCCAAGATATAAGATACAATTT
ACTAAATGCATGANACTCAAGAAGAACGAAGACCAAAGTGTGGACACTTT
GCCCCTTCTTAGAATGGGGAACAAAACACCCATGGAAGGAGTTACAGAGA
CAAAATTTGGAGCTGTGATGAAAGGATGGACCATCTAGTGATTGGCCTAA
CCAGGGGAACATCCCATAATCAGTTTTCAAAGGCTGAAACAATTGATAAC
CTAAA

ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTCTTCAGTTCTGAGCCCCATTTTTT
AATGGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCATTATATA
TGTTGGATATTAGTCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCC
AATCTGTTGGTGGTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAG
AAGCTTTGGAGTTTCATGAGGTCCCATTTGTCAATCTCGATCTTATAGCA
CAAGCCATTGCTGTTCTATTCAGGAATTTTTCCCCTGTGCCCATATATTC
AAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTA
TGTGAAGTTCCTTGATCCACTTAGATTTGACCTTAGTACAAGGAGATAAG
TATTTTTATTAGGTATTTTACTCATTTACATTTCCAATGCGATCCCAAAA
GTCCCCCATACCATCCTCCCTCCCCTCCCCACGCACTCCCATTTCTTGGC
CCTGGCATTCCCCTGTACTGAGGCATATAAAGTTTGAACGACCAATGGGC
CTCTTCTTCCACTGATGGCTGACTAAGTCATCTTCTGATTCATATGCAGC
TAGAGACATGAGCTCCGGGGGACTGGTTAGNTCATATTGTTTTTCCACCT
ATAGGTTTGCAGACCCCTTTAACTCCTTGGATACTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_d08.b1 MSMg01no376_d08.b1 CHROMAT_FILE:
MSMg01no376_d08.b1 PHD_FILE: MSMg01no376_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:03 2005
         (323 letters)



>mm_chr3_42556070_42556792
          Length = 723

 Score =  609 bits (315), Expect = e-179
 Identities = 321/323 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccctttctcccttcctccctccctcaaatgttaacatgcataagtaacaaaggcttttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 ccctttctcccttcctccctccctcaaatgttaacatgcataagtaacaaaggcttttct 356

                                                                       
Query: 61  cccaaaagataaagaaaaagaaagaatatgtcatatattgttgcactgctaatatcactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 cccaaaagataaagaaaaagaaagaatatgtcatatattgttgcactgctaatatcactt 296

                                                                       
Query: 121 ggttttgtctttggagatctgtagctacacctaaattaaaatccatgtgattaaagccat 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 295 ggttttgtctttggagatctgtagctacacctaaattaaaatccatgtgactaaagtcat 236

                                                                       
Query: 181 tctaaagcagatatataatgttttcaactttaaataaaaatttattcagagtatagaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 tctaaagcagatatataatgttttcaactttaaataaaaatttattcagagtatagaaga 176

                                                                       
Query: 241 aaagtaacccaatcacaaaggaactcacacaatatgtactcactgataagtggatattag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 aaagtaacccaatcacaaaggaactcacacaatatgtactcactgataagtggatattag 116

                                  
Query: 301 cccagaaagttaggatacccaag 323
           |||||||||||||||||||||||
Sbjct: 115 cccagaaagttaggatacccaag 93


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |