BAC Information

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BAC

Clone NameMSMg01-376G14
Chromosome3 (Build37)
Map Location 41,965,574 - 41,966,021
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
Downstream geneLOC100039204, LOC100039219
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376G14.T7 (MSMg01no376_g14.b1)MSMg01-376G14.TJ (MSMg01no376_g14.g1)
ACCAG481734AG481735
length759759
length of high quality
(start - end)		432 (48 - 479)446 (76 - 521)
definitionCHROMAT_FILE: MSMg01no376_g14.b1 PHD_FILE: MSMg01no376_g14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:18 2005CHROMAT_FILE: MSMg01no376_g14.g1 PHD_FILE: MSMg01no376_g14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCTACTGTTCAATACCGAAGGGCTGAGAAGCCCTTGAAAAAAT
GTCCAACATCCTTAATCATCAGGGAAATGCAAGTCAAAACAACACTGATA
TTCCACCTCACACCAGTCAGAATGGCTAGGATCAAAAATTCAGGTGACAG
CAGATGCTGGCAAGGATGTGGAGAAAGAGGAACACTTCTCCATTGCTGGT
GGGATTTCAACCTTGTACAAGCACTCTAGAAATCAGTCTGGTGGTTCCTC
AGAAAACTGGACATAGTACTACCGGCAGATCGAGCAATACCTCTCCTGGA
CATATACCCAGAAGAGGTTCCAACTGGTAATAAGGACATATGCTCCACTA
TGTTAATAGCAGCCCTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGA
TGTTCCTCAATAGAGGAATGAATACACAAAGTGTGGTACATTTACACAAT
GGAGTATTACTCAGCAATTAAAAACAATGATTTACGAATTTCTTATGCCA
ATGGATTTATCTGGAGGATAACATCCTGAGTGAGGTAAACCCATCCCAAA
GAAAGCCCTTGGATGGCCTCCCTGATAAGTGGGAATTAACCCCGAACCCA
AAAAACCCCCAAAAAATTTTGCTTACCCCCGAAAATTCCAATTAAGGAAG
AACCACTGGTGGGAACTTCCTTCCTCCCCTCAAGAGGGATAAAAAACCCC
GGGGGGGGG

NCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGCTAAAAGCTTAAAGAAATAAAAA
ACTGGCTCTGCATTGGAACTCATGAGTGCTGAAGTGGAATAAAACAAAAT
AGCTGAGAAAACTGTTTATTTTTAAAAGAAACAAGTTGCATCAATGATCA
ATAATGGAATTACAGGGGATGCTAGCGTTCTCTTCCCAGCAAGGAATGTT
CAGATTGGAGAGATGCTCCTCACAGAGGAAGACATTAGCCAAAAAATGTT
CCCATGACAGAAACGGGAACTAGACTATTCCTTAAAATTCCATGGGACCC
CAGTCTTTGATGCCTCTAGTTTCCTGTTGCTGGTACTTAAAAATCAGAGA
AGAGAGTGGAAAATGTGATTTATTGCTCAGTCTAAGCACAGCCTAATTCA
GCTTCACGTGTATTTTAATATTTGAGGACTCAATTTTGTAATTTTAACTC
AAGTCCATACCAAACCACTGTGCCATCTCCATCTCTCAGGAGCTTGGCAN
GATATAGTGTGTAAAGAAAATAGAACTTCATTTCCTTTCATGGGGTGTCC
GAAGCAATATGGGAATTCCCTTGTAACACCCCGCTGCCCGGAAGCGCCCG
AAACCAAAAACAATTCTATTTTTGGAGAACCATTTGGGAAAAAAATGGTT
ATGGAAAAAACCTGACCCAATGTGGGTCTTTTTCTCCTCCCCTAAACTCT
TACCAAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_g14.g1 MSMg01no376_g14.g1 CHROMAT_FILE:
MSMg01no376_g14.g1 PHD_FILE: MSMg01no376_g14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:18 2005
         (446 letters)



>mm_chr3_41965374_41966221
          Length = 848

 Score =  793 bits (410), Expect = 0.0
 Identities = 438/448 (97%), Gaps = 2/448 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgctaaaagcttaaagaaataaaaaactggctctgcattggaactcatgagtgctgaagt 60
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 648 tgctaaaagcttaaagaaataaaaaactggctctgcattggaactcataagtgctgcagt 589

                                                                       
Query: 61  ggaataaaacaaaatagctgagaaaactgtttatttttaaaagaaacaagttgcatcaat 120
           | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 588 gcaataaaacaaaatagctgagaaaactgtttattcttaaaagaaacaagttgcatcaat 529

                                                                       
Query: 121 gatcaataatggaattacaggggatgctagcgttctcttcccagcaaggaatgttcagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gatcaataatggaattacaggggatgctagcgttctcttcccagcaaggaatgttcagat 469

                                                                       
Query: 181 tggagagatgctcctcacagaggaagacattagccaaaaaatgttcccatgacagaaacg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tggagagatgctcctcacagaggaagacattagccaaaaaatgttcccatgacagaaacg 409

                                                                       
Query: 241 ggaactagactattccttaaaattccatgggaccccagtctttgatgcctctagtttcct 300
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 408 ggaactagactattccttaaaattccatgggactccagtctttgatgcctctagtttcct 349

                                                                       
Query: 301 gttgctggtacttaaaaa--tcagagaagagagtggaaaatgtgatttattgctcagtct 358
           || | |||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 gtagatggtacttaaaaaaatcagagaagagagtggaaaatgtgatttattgctcagtct 289

                                                                       
Query: 359 aagcacagcctaattcagcttcacgtgtattttaatatttgaggactcaattttgtaatt 418
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 288 aagcacagcctaattcagcttcacatgtattttaatatttgaggactcaattttgtaatt 229

                                       
Query: 419 ttaactcaagtccataccaaaccactgt 446
           ||||||||||||||||||||||||||||
Sbjct: 228 ttaactcaagtccataccaaaccactgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 848
Length adjustment: 10
Effective length of query: 436
Effective length of database: 838
Effective search space:   365368
Effective search space used:   365368
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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