BAC Information

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BAC

Clone NameMSMg01-376K08
Chromosome3 (Build37)
Map Location 37,389,283 - 37,570,991
singlet/doubletdoublet
Overlap geneSpata5, LOC665778, Spry1
Upstream geneLOC665709, Exosc9, Ccna2, Bbs7, Trpc3, 4932438A13Rik, Tenr, LOC652987, Il2, Il21, Cetn4, Bbs12, LOC100041328, Fgf2, LOC100040649, Nudt6
Downstream geneEG381438, LOC100038875, LOC100041338, EG626367, 4930556A17Rik, LOC665811, EG665821, LOC100041366, LOC100040785, LOC665838, Ankrd50, LOC100041378, LOC665855, LOC100040824
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376K08.T7 (MSMg01no376_k08.b1)MSMg01-376K08.TJ (MSMg01no376_k08.g1)
ACCAG481914AG481915
length757734
length of high quality
(start - end)		483 (44 - 526)479 (76 - 554)
definitionCHROMAT_FILE: MSMg01no376_k08.b1 PHD_FILE: MSMg01no376_k08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:35 2005CHROMAT_FILE: MSMg01no376_k08.g1 PHD_FILE: MSMg01no376_k08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,570,606 - 37,570,991)(37,389,283 - 37,389,761)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAGAAGGAATCAGAAATGTTCCAGAGACCTAAATAAACAGTCATGGA
AAAAAAAAATCACAGCAGCATATATGCTTATAGGTTGATTTGAAAACATT
AAGAATTTATGAGAGCAATATTCTATATTCAAAATTGTTAAAGTTCTTGA
GCATTGACTATAAAAAATTTGTCTAGTTGGTTGGGCATGGTGGCACACAT
AATCCCAGCACTTGGAAGACTGGAGGCAAAAAGATCATGAGCTTGGAACC
AATTTGAGCTACAGAATGAGCTCCAACCAACCTGGGCTAAGAAAAGGCCC
TGCTTGGGAGGGGGAAAAGCTAAGTCAATTTTAATATAGAGAAAGCAAAA
TTCTCTTACTGAAGAACTAAAGAACATATATTTTGCTGGGACTTCTTCAT
GTGCCTATTTATGTAGGTCTCTGAACATCTCCCCATTTCTTCTGAAATGC
TAACTATTTGGCATAGTGGGACACAGAGTTTGGGGTGGGGGCAGTGTGAT
TCACCCCCCCCTCGAATCTGTCACATGAAATGAAATGCTTATAGCCCTTT
TGTTTTTCAACATGTATCCAATTAAGGACCCTTTGTTGTGGTGAAAAAAC
CGACTCCAACAACTTATCGAGAAACTGGGCTAATTTCCTCTCTTCCTTTT
CGTCAACAAGCTTCTTTTATCTTTATTCTTATTTTCGTTACACAGAAACC
TTTCTCA

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCATTAGGTACTTGCAAGATCT
ACCATGTGTAAAAAGACTTTAATACATTCAACTAACTTCATATATGAGAA
CCATTTTGTAATCTAGATGTAACTTTTCTTCCTTCTGTTTCGCCTTTCTT
GGTTTAAGTGTACGTGTAAGTGTGTTTGTGTCTGGGGAGTGAAGGGGTGG
AATGCTATAAACAGAAGCCAAAGTAGGATTTTATATCCTTTATCCTTCAA
GGCAGTCTCTCCCTGAACCTGGATCTTGCCTCCTTAAACATTTTTTGCCT
GCCTACCCCTGTCTGTCTGTCTGTCTGTCTGTCAATCATGAGGCTGAAAG
ACAACAAAAGCATCTGTCTCTCTGTTCTTCCTTAAAATGAAGGTATTCAT
TTTAAGGTGGGCACAGGACCATGCCTACCTTACTGTTTGTCTGCTGAGGC
ATTTGTGGTTCTCATGCGTGCACAGCTAAATCTCTTAACTGCTAAGCTAT
CTCTTTGACCACAACTTTTCTTTTTAACATTTAAGGGTTCATATCATTGT
GAGGTGGCTATCCAGAATCCGAACAAGCATATTGGAAAAGAAAGTTGACC
GTAGGAAAGGTTTCCAAAGTCTAACCTGTATGGTTGGATATACTAAAAAA
GGAATTTTTCGGAACTCACACACTTTTTTTTACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_k08.b1 MSMg01no376_k08.b1 CHROMAT_FILE:
MSMg01no376_k08.b1 PHD_FILE: MSMg01no376_k08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:35 2005
         (483 letters)



>mm_chr3_37570606_37571488
          Length = 883

 Score =  739 bits (382), Expect = 0.0
 Identities = 385/386 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccagaaggaatcagaaatgttccagagacctaaataaacagtcatggaaaaaaaa 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gaattccagaaggaagcagaaatgttccagagacctaaataaacagtcatggaaaaaaaa 327

                                                                       
Query: 65  aatcacagcagcatatatgcttataggttgatttgaaaacattaagaatttatgagagca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aatcacagcagcatatatgcttataggttgatttgaaaacattaagaatttatgagagca 267

                                                                       
Query: 125 atattctatattcaaaattgttaaagttcttgagcattgactataaaaaatttgtctagt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 atattctatattcaaaattgttaaagttcttgagcattgactataaaaaatttgtctagt 207

                                                                       
Query: 185 tggttgggcatggtggcacacataatcccagcacttggaagactggaggcaaaaagatca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 tggttgggcatggtggcacacataatcccagcacttggaagactggaggcaaaaagatca 147

                                                                       
Query: 245 tgagcttggaaccaatttgagctacagaatgagctccaaccaacctgggctaagaaaagg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 tgagcttggaaccaatttgagctacagaatgagctccaaccaacctgggctaagaaaagg 87

                                                                       
Query: 305 ccctgcttgggagggggaaaagctaagtcaattttaatatagagaaagcaaaattctctt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86  ccctgcttgggagggggaaaagctaagtcaattttaatatagagaaagcaaaattctctt 27

                                     
Query: 365 actgaagaactaaagaacatatattt 390
           ||||||||||||||||||||||||||
Sbjct: 26  actgaagaactaaagaacatatattt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space:   412929
Effective search space used:   412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no376_k08.g1 MSMg01no376_k08.g1 CHROMAT_FILE:
MSMg01no376_k08.g1 PHD_FILE: MSMg01no376_k08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:35 2005
         (479 letters)



>mm_chr3_37389083_37389961
          Length = 879

 Score =  926 bits (479), Expect = 0.0
 Identities = 479/479 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaccattaggtacttgcaagatctaccatgtgtaaaaagactttaatacattcaactaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcaccattaggtacttgcaagatctaccatgtgtaaaaagactttaatacattcaactaa 260

                                                                       
Query: 61  cttcatatatgagaaccattttgtaatctagatgtaacttttcttccttctgtttcgcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttcatatatgagaaccattttgtaatctagatgtaacttttcttccttctgtttcgcct 320

                                                                       
Query: 121 ttcttggtttaagtgtacgtgtaagtgtgtttgtgtctggggagtgaaggggtggaatgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcttggtttaagtgtacgtgtaagtgtgtttgtgtctggggagtgaaggggtggaatgc 380

                                                                       
Query: 181 tataaacagaagccaaagtaggattttatatcctttatccttcaaggcagtctctccctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tataaacagaagccaaagtaggattttatatcctttatccttcaaggcagtctctccctg 440

                                                                       
Query: 241 aacctggatcttgcctccttaaacattttttgcctgcctacccctgtctgtctgtctgtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacctggatcttgcctccttaaacattttttgcctgcctacccctgtctgtctgtctgtc 500

                                                                       
Query: 301 tgtctgtcaatcatgaggctgaaagacaacaaaagcatctgtctctctgttcttccttaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtctgtcaatcatgaggctgaaagacaacaaaagcatctgtctctctgttcttccttaa 560

                                                                       
Query: 361 aatgaaggtattcattttaaggtgggcacaggaccatgcctaccttactgtttgtctgct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatgaaggtattcattttaaggtgggcacaggaccatgcctaccttactgtttgtctgct 620

                                                                      
Query: 421 gaggcatttgtggttctcatgcgtgcacagctaaatctcttaactgctaagctatctct 479
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaggcatttgtggttctcatgcgtgcacagctaaatctcttaactgctaagctatctct 679


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space:   407561
Effective search space used:   407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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