BAC Information

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BAC

Clone NameMSMg01-376M14
Chromosome3 (Build37)
Map Location 49,317,457 - 49,317,920
singlet/doubletsinglet
Overlap genenone
Upstream gene1700018B24Rik, LOC100039404, EG666230, 4932443G14, LOC545519, LOC676568, LOC666247
Downstream geneLOC100039579, LOC100039587, LOC638779, Pcdh18, LOC100039628, LOC639469, Slc7a11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376M14.T7 (MSMg01no376_m14.b1)MSMg01-376M14.TJ (MSMg01no376_m14.g1)
ACCAG482021AG482022
length775750
length of high quality
(start - end)		468 (45 - 512)437 (75 - 511)
definitionCHROMAT_FILE: MSMg01no376_m14.b1 PHD_FILE: MSMg01no376_m14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:46 2005CHROMAT_FILE: MSMg01no376_m14.g1 PHD_FILE: MSMg01no376_m14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTTCAAGTATGAAATCAATTGTAAGAGCTTGCATTCCGTGTAAAT
TAGTTTTATGTCACTCAGATGCATGTATGCTCACACCTCATTTAAAAAGA
GATTAGTAGCCCATGTATATTTAATGAAGTTAGCATCAATTTCAGACCAC
ATATCTGCACTCTTCATTCTCAATTCTGCTTCATTGTTCCCTTTTCTTTA
ATGAGAGCTTAAATTTTGTAAGAGAGATTCTAACCTCCCTGAAACTCTAT
TCAATGCAGCACCCCCTCTCAGAAGATCTCAGCGTTTAATGGCATATATG
ATTGATAAGCATTTCTAATATGAATACCTCAAATATATGTGCACAAAATT
TAAGATCCACAGTTTTAGTTTCTATTTTTTATTTACTAGTTTCCTCAAGA
AAGTTGTGTTGATATCAGCCTTTGATAGAGCTTATGCGTTCTTTGCTACT
AAGTATAGTGTTGNAAAGAGACCACACTTTACTTAAGACTACAATCCTTA
TTTAATATAATTTAATAATATAAATCCCATCCTAAGAAATAAGACCACCC
GTGGTGGTTTTGATGTGCCCTCCCCGGCTCCATTAATGTGGAAAAATCAG
CCCTCGGATGGGACCCCAGTTTGGGGTGGTTTTGAAAACATTTATAAAAG
GGGGCCTTGCTGGGAAAAAAAAAAACTCCTCACCTTCCTTTATTAGGGAT
TCTGGGTTCCCATAGTGCCCCCCCC

AATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTAAGAATGTTCCCTATTCATTAAC
ATTCAAATTCACTTCTAGTAGAGACAGGGAAAATGATTAGGAATTACAAT
TTACTTGAACAGAGCTAGAAAAGCTCAGGGCTAGGCTGCATAGTAATTAC
TTAGGACAAAACTGAGTCACACCCAAACACGTGAATAAACAATGGCCTAG
CAAATAGGTGGGTTGTCGCATGAAAAGTTTAATAGAAGTGAATTCCCCTG
GTGCAGGTTTTTTTCACTAGGCCCAGAGGAATAGCATAGTCAGGTATTTA
CTAAAACCACCTGGTGGTGGGTTTAACAGAGACTAGCATTGTATCAGAGC
ATTCACCAGGCGCCTGTGTTTAGCTAATCCTAATTAGGAATAGGAACCTA
TTCTCAGTTGTAAACAAGGCCTGGCTCCTGCCATCTTTTTATGTATATAT
TTTCTTTGTTGTGTGGTAAGAACCAGTGTACCTTGAAGTTTGTATTTGCT
TAGCCTTCTTCTTTTTCTTCTGGATTAAAAGGCTGGTGTTTGCTTGGAAC
AATACATTTCCGATCCAGCACTCCCTTGAGTCTGTGGCCATTTGTCACCC
TTTTTCCACCAACTCTTTTCCATCTGGCTGAAAGGTGGATTTCCCCCAAA
TTGAAAAGGTTGACTGGGCCCTCCCGTGGCACTTTCCCCCCCCCCAACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_m14.b1 MSMg01no376_m14.b1 CHROMAT_FILE:
MSMg01no376_m14.b1 PHD_FILE: MSMg01no376_m14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:46 2005
         (468 letters)



>mm_chr3_49317253_49318120
          Length = 868

 Score =  897 bits (464), Expect = 0.0
 Identities = 464/464 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacttcaagtatgaaatcaattgtaagagcttgcattccgtgtaaattagtttta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 gaattcacttcaagtatgaaatcaattgtaagagcttgcattccgtgtaaattagtttta 609

                                                                       
Query: 65  tgtcactcagatgcatgtatgctcacacctcatttaaaaagagattagtagcccatgtat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 tgtcactcagatgcatgtatgctcacacctcatttaaaaagagattagtagcccatgtat 549

                                                                       
Query: 125 atttaatgaagttagcatcaatttcagaccacatatctgcactcttcattctcaattctg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 atttaatgaagttagcatcaatttcagaccacatatctgcactcttcattctcaattctg 489

                                                                       
Query: 185 cttcattgttcccttttctttaatgagagcttaaattttgtaagagagattctaacctcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 cttcattgttcccttttctttaatgagagcttaaattttgtaagagagattctaacctcc 429

                                                                       
Query: 245 ctgaaactctattcaatgcagcaccccctctcagaagatctcagcgtttaatggcatata 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ctgaaactctattcaatgcagcaccccctctcagaagatctcagcgtttaatggcatata 369

                                                                       
Query: 305 tgattgataagcatttctaatatgaatacctcaaatatatgtgcacaaaatttaagatcc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tgattgataagcatttctaatatgaatacctcaaatatatgtgcacaaaatttaagatcc 309

                                                                       
Query: 365 acagttttagtttctattttttatttactagtttcctcaagaaagttgtgttgatatcag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 acagttttagtttctattttttatttactagtttcctcaagaaagttgtgttgatatcag 249

                                                       
Query: 425 cctttgatagagcttatgcgttctttgctactaagtatagtgtt 468
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 cctttgatagagcttatgcgttctttgctactaagtatagtgtt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space:   392964
Effective search space used:   392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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