Query= MSMg01no377_a07.b1 MSMg01no377_a07.b1 CHROMAT_FILE:
MSMg01no377_a07.b1 PHD_FILE: MSMg01no377_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:03 2005
(495 letters)
>mm_chr3_51435797_51436691
Length = 895
Score = 911 bits (471), Expect = 0.0
Identities = 486/491 (98%)
Strand = Plus / Plus
Query: 5 gaattccttgaagaacggtgaccatctgtgactctggcataaaaatgacatattgaggaa 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttgaagaatggtgaccatctgtgactctggcataaaaatgacatattgaggaa 264
Query: 65 ggcagatggaattaaaatgggtctttcaggcttaaactgtcaaactgtggaacagcttat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggcagatggaattaaaatgggtctttcaggcttaaactgtcaaactgtggaacagcttat 324
Query: 125 atggcgaccttccagaagagtgtgacagaatgaatttcttttaacctctgatgcagtcaa 184
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 325 atggcgaccttccagaagagtgtgacagaatgaatttcttttaacctcggatgcagtcaa 384
Query: 185 tgagtattgtctatctttgctcctctggccattccagataatattgcattggggacagta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgagtattgtctatctttgctcctctggccattccagataatattgcattggggacagta 444
Query: 245 tctttaagtgaccatcagagatagagtttttatgggcctcaagggttgttaaatattagc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctttaagtgaccatcagagatagagtttttatgggcctcaagggttgttaaatattagc 504
Query: 305 tgtttgaaacccaggaaaggcagcattcaaagacctctgggcttgatgtcaaaatagctg 364
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgtttgagacccagaaaaggcagcattcaaagacctctgggcttgatgtcaaaatagctg 564
Query: 365 gctgtaaataacatctttcatttattgtttgtttgcttaactcctaagccagcactaccc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gctgtaaataacatctttcatttattgtttgtttgcttaactcctaagccagcactaccc 624
Query: 425 aatagagattataatgctacccttgatgcaaatcatgtataattaaagtttatctgataa 484
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 625 aatagagattataatgctacccttgatgcaaatcatgtataattaaaatttatctgataa 684
Query: 485 ccatattttta 495
|||||||||||
Sbjct: 685 ccatattttta 695
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space: 429225
Effective search space used: 429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no377_a07.g1 MSMg01no377_a07.g1 CHROMAT_FILE:
MSMg01no377_a07.g1 PHD_FILE: MSMg01no377_a07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:04 2005
(414 letters)
>mm_chr3_51617205_51618018
Length = 814
Score = 739 bits (382), Expect = 0.0
Identities = 401/414 (96%), Gaps = 11/414 (2%)
Strand = Plus / Minus
Query: 1 caggccaatgagagactctgtatctggaaagaacaaaaacaaaacagaaaacaaaacaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caggccaatgagagactctgtatctggaaagaacaaaaacaaaacagaaaacaaaacaaa 386
Query: 61 caacccacgagcagaagacaagcagaacctaaggaataaataacactcaaggccaggtgg 120
|||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 -----------cagaagacgagcagaacctaaggaataaataacactcaaggccaggtgg 337
Query: 121 cctgcttcctctacagtcacctgtgcgcaagtgcacccacacagagaataaatgtactcg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 cctgcttcctctacagtcacctgtgcgcaagtgcacccacacagagaataaatgtactcg 277
Query: 181 attatacacaggcacacatgcatgtgcacatacatacacacaaacacacacatatacaca 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 276 attatacacaggcacacatgcatgtgcacatacataaacacaaacacacacatatacaca 217
Query: 241 ggtgcacatgcacatacacaaaaatatatacatatgcctgcacacagacagacacacaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 ggtgcacatgcacatacacaaaaatatatacatatgcctgcacacagacagacacacaga 157
Query: 301 cacatgcatacacccacatacatccccacccagacacaccaagagcagtgcatactgata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 cacatgcatacacccacatacatccccacccagacacaccaagagcagtgcatactgata 97
Query: 361 gccttattgtcacaactgaatggtgttgataatgattctgaaacctggaggaga 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 gccttattgtcacaactgaatggtgttgataatgattctgaaacctggaggaga 43
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space: 326025
Effective search space used: 326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
