Query= MSMg01no377_e02.b1 MSMg01no377_e02.b1 CHROMAT_FILE:
MSMg01no377_e02.b1 PHD_FILE: MSMg01no377_e02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:22 2005
(520 letters)
>mm_chr3_82522644_82523563
Length = 920
Score = 754 bits (390), Expect = 0.0
Identities = 390/390 (100%)
Strand = Plus / Minus
Query: 5 gaattcttaatcattcttagtcctgtacccaaacatagttcacaactagagaatctaagt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gaattcttaatcattcttagtcctgtacccaaacatagttcacaactagagaatctaagt 331
Query: 65 tgaagtcttttagttgtgtcaaataacttgccattagaactaagatcatttgcacctttc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tgaagtcttttagttgtgtcaaataacttgccattagaactaagatcatttgcacctttc 271
Query: 125 tgtgacactctttaaagttgaaagcatatagttatttttcttcctttttatggtcaggtt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tgtgacactctttaaagttgaaagcatatagttatttttcttcctttttatggtcaggtt 211
Query: 185 aacatatgatgttattctgtctcaaagttctaagtctgaattttgtgttaatgaatcata 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 aacatatgatgttattctgtctcaaagttctaagtctgaattttgtgttaatgaatcata 151
Query: 245 aatatgtctgtagtcccacactcactcctgaactccagaattagtacctgatggttctat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 aatatgtctgtagtcccacactcactcctgaactccagaattagtacctgatggttctat 91
Query: 305 attaataggcatctggatctcccataactcacactgagctaagattccagcacattctgt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90 attaataggcatctggatctcccataactcacactgagctaagattccagcacattctgt 31
Query: 365 agccttgcactatcacctcctcagttcata 394
||||||||||||||||||||||||||||||
Sbjct: 30 agccttgcactatcacctcctcagttcata 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space: 464100
Effective search space used: 464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no377_e02.g1 MSMg01no377_e02.g1 CHROMAT_FILE:
MSMg01no377_e02.g1 PHD_FILE: MSMg01no377_e02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:22 2005
(475 letters)
>mm_chr3_82382253_82383132
Length = 880
Score = 762 bits (394), Expect = 0.0
Identities = 457/480 (95%), Gaps = 5/480 (1%)
Strand = Plus / Plus
Query: 1 caggaatgatcggtgaatcatgtcaacgttctttttctttcgttgcattttaagaggtga 60
|||||||||||||||||||||||||| |||||||| |||| |||| |||||||||||||
Sbjct: 201 caggaatgatcggtgaatcatgtcaatgttcttttccttttgttgtgttttaagaggtga 260
Query: 61 gagggagcgtggtgaggagcctcggctggagagtttgagagctgcagtttcttttaggta 120
|||||||| || || ||||| | ||||||||||||||||| ||||||||||||||||||
Sbjct: 261 gagggagcatgatggggagctttggctggagagtttgagaactgcagtttcttttaggtg 320
Query: 121 atagactccaaggagaagtcttttcccactagcaactgtctgtctactgtcgggatgatg 180
|||||||||||||| |||||||||| ||||||||||| |||||||||||| |||||||||
Sbjct: 321 atagactccaaggataagtcttttctcactagcaactctctgtctactgttgggatgatg 380
Query: 181 cttttctctctagcccatccatttattataggagccacaattgccttgtatctgtta--- 237
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttttctctctagcccatccatttattataggagccacaattgccttgtatctgttaatt 440
Query: 238 aagtctactt--aaaaaaaattctcttctagttctattgggtatctacaccagctgcaat 295
|||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 aagtctactttaaaaaaaaattctcttctagttccattgggtatctacaccagctgcaat 500
Query: 296 gacacccatatcaaggatcctgtcctgcaatgaaagccccaccatgtttttaaaaaagac 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gacacccatatcaaggatcctgtcctgcaatgaaagccccaccatgtttttaaaaaagac 560
Query: 356 atttgtgcggttcttactggtgtgcttttcactgctgagcacagagctgccttttagtag 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atttgtgcggttcttactggtgtgcttttcactgctgagcacagagctgccttttagtag 620
Query: 416 gatggaaagatcttatttttcttgaactctcagaacaaacctttcacaccagacactatc 475
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gatggaaagatcctatttttcttgaactctcagaacaaacctttcacaccagacactatc 680
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 880
Length adjustment: 10
Effective length of query: 465
Effective length of database: 870
Effective search space: 404550
Effective search space used: 404550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
