Query= MSMg01no377_f16.b1 MSMg01no377_f16.b1 CHROMAT_FILE:
MSMg01no377_f16.b1 PHD_FILE: MSMg01no377_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:30 2005
(344 letters)
>mm_chr3_11076549_11077292
Length = 744
Score = 613 bits (317), Expect = e-180
Identities = 337/345 (97%), Gaps = 7/345 (2%)
Strand = Plus / Minus
Query: 5 gaattctatgatctgactttgataatgatgaatattattaatattttcagagtttttagc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gaattctatgatctgactttgataatgatgaatattattaatattttcagagtttttagc 391
Query: 65 atggagaattctattaatttgtgggattttcatacattatacatttcatacattatctta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 atggagaattctattaatttgtgggattttcatacattatacatttcatacattatctta 331
Query: 125 ttcacccccaaatcctccccttaagtccatctaaatctaccacttctcaatccctccaca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ttcacccccaaatcctccccttaagtccatctaaatctaccacttctcaatccctccaca 271
Query: 185 cactctgtgtcctctttgaatttagtttatttgaaaggaatgttttttttgttttttttt 244
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 270 cactctgtgtcctctttgaatttagtttatttgaaaggaat--tttttttgttttttttt 213
Query: 245 t--ccttttttttt-cttcttttttttt-aattaggtattttcctcatttacatttccaa 300
| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 212 tttccttttttttttcttcttttttttttaattaggtattttcctcatttacatttccaa 153
Query: 301 tgctatcccaaaagtcccccataccctccccccc-acccccctac 344
|||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 152 tgctatcccaaaagtcccccataccctccccccccactcccctac 108
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space: 246225
Effective search space used: 246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no377_f16.g1 MSMg01no377_f16.g1 CHROMAT_FILE:
MSMg01no377_f16.g1 PHD_FILE: MSMg01no377_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:30 2005
(397 letters)
>mm_chr3_10849414_10850211
Length = 798
Score = 723 bits (374), Expect = 0.0
Identities = 392/398 (98%), Gaps = 1/398 (0%)
Strand = Plus / Plus
Query: 1 ccatgaaaaatgcattcctattaaactatagttgcttttaaactcatcaccaaataattg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccatgaaaaatgcattcctattaaactatagttgcttttaaactcatcaccaaataattg 260
Query: 61 gttctatattgaaaagagtcctcaaataccttcttatttcattacctctggatatcctgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttctatattgaaaagagtcctcaaataccttcttatttcattacctctggatatcctgt 320
Query: 121 atttcaggcttttattattttcatctctcattgtatttctgttatttcagaaaagatatt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 atttcaggcttttattattttcatctctcattgtatttctgttatttcagaaaagacatt 380
Query: 181 ctggagagtctgtggcatgttggtgacggagccaatggaaaggtaagtaagtagggcctt 240
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 ctggagagtctgtggcatgttggtgacagagccaatggaaaggtaagtaagtagggcctt 440
Query: 241 -ggccctctaatgtaacccctgtattgcttctcctggttttgtctaaggtccccaaacac 299
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 tggccctctaatgtaacccctgtattgcttctcctggtttagtctaaggtccccaaacag 500
Query: 300 aaactttgatgaagtgctaaagtttactcagtgattacatctacttatggtgccaaatcc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaactttgatgaagtgctaaagtttactcagtgattacatctacttatggtgccaaatcc 560
Query: 360 aatttccttcaggacactattcactgctaccttttgta 397
|||||||||||||||| |||||||||||||||||||||
Sbjct: 561 aatttccttcaggacattattcactgctaccttttgta 598
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 798
Length adjustment: 9
Effective length of query: 388
Effective length of database: 789
Effective search space: 306132
Effective search space used: 306132
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
