BAC Information

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BAC

Clone NameMSMg01-377I18
Chromosome3 (Build37)
Map Location 114,286,339 - 114,286,681
singlet/doubletsinglet
Overlap genenone
Upstream geneRnpc3, Col11a1, LOC100043220
Downstream geneOlfm3, EG546808
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377I18.T7 (MSMg01no377_i18.b1)MSMg01-377I18.TJ (MSMg01no377_i18.g1)
ACCAG482602AG482603
length788785
length of high quality
(start - end)
413 (46 - 458)371 (74 - 444)
definitionCHROMAT_FILE: MSMg01no377_i18.b1 PHD_FILE: MSMg01no377_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:46 2005CHROMAT_FILE: MSMg01no377_i18.g1 PHD_FILE: MSMg01no377_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGATTTCCCCTGCCTGCCTCTGTGCATTTTCGGCTAAAGAGAA
GAGGGAGATAGAACCTGTTGAGACCACCTCCAGTAGATAGGCATGGCTCC
TGGTGGAGGGATGGGGCCACCCACCCATCTCAAAAATTTTTAACCTAGAA
ATGTTCCTGTCCAAAGGAAGAACACACACAAAAATTGGAACAGAGATTGA
AGGTAGAGCCAGATGGAGGCTGCCCTACAATCATGTCTGCAAACACCAAA
CCCAACACTTGCTGTGGTCAAGAGGTGCTTGCTAACAGGAACCTAGTGTG
GCTGTTCCTTGGAAGGTACAGCCAGCAACCGACCAATGCAAATGTGGATG
CTTGGAGCCAACCATCAGAAGGAGCTCAGGGAACCTGGTTGAGCAACAGG
CGGAAGGACTGGAGGAGCAGAGGGGAATTGCAGCACAATTGGAAGAACAG
CATAGGCTGGTCTGACCACCCAGTTCTTTCTTAGTTTAAACCTACCAACC
AAGGAGTGTACCGCTAATTGATTCTCGACCTCACAATCCTATTTTCTAAA
AATAGCCTTTGTCCCCAACCCATGTTTAAAAATAGCCCCTGTTCCTCTCG
TTGTTTGCACCCCCTTTTTTTTTATTTTCCTCCCCTTTCCCTTCTTTCTT
TTTTCTCCCCGTTATTTTTTTTCCCCCTTTTTCCCCCCTCGTTTCCCTCT
CTTTTCTTTTCCTCCCCTTTTTCCTTCCCTCCCCCCCC
GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTATTTAAATAAGACTTCTTCCCCTTC
AGGAACTAAGTCATTCGTTATGTTATTTACCTTAATAATAGGACATAGCA
TCAGAAAGAAAAGAAAAGCAAAACAAAGCAAAATATATCCAGAGGGGTCT
TCTTTTAAAGAAATTATTTTTTAAAAAGATTTATTTGTTTATTTTATGTA
TATGAGTACATTGTAACTATTTTCAGACACACCAGAAGAGGGCATTGAAT
CGCATTACAGATGGTTGTGAGCCACCATGTAGTTGCTGGGAATTGAACTC
TGGATCTCTGAAAGAGCAGTCAGTGCTCTAAACTGCTGAGCCATCTCTTC
TGCCCCTAGAGTGGTTTTCTATCCTAGGTTTTGAGAAAGCCGAAAATTTA
ATATAAGAAGTAAAAAGAATCTTGCTATAGACATCTTTGTAAAGCACTGA
GTGAATACAAATACTTTTTCTGCATTCTTCTCTTTCCACCATCTAATGTT
AGCCAAGGAGAGGATTATTTTCTGTTTGGGGGGAGCGCGGGTCCCCCCGA
TGCGATATGTCCTCCTTTACCCCGATTCTCACTTTCATTATCCTCCCCCC
TCCCTCTTTTCCCCCATTCCACTTTCTTTTTCCTTCCTAAAAATAAACCC
TCCTTTTTCCCACTTTTTTTCCTCTGCTTTATACTCCCCTTCTTGTCTGT
TCCCTTTTTATCTCATTTCTCACTCCGTTTTTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_i18.g1 MSMg01no377_i18.g1 CHROMAT_FILE:
MSMg01no377_i18.g1 PHD_FILE: MSMg01no377_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:46 2005
         (371 letters)



>mm_chr3_114286339_114287109
          Length = 771

 Score =  663 bits (343), Expect = 0.0
 Identities = 343/343 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttatttaaataagacttcttccccttcaggaactaagtcattcgttatgttatttacctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ttatttaaataagacttcttccccttcaggaactaagtcattcgttatgttatttacctt 284

                                                                       
Query: 61  aataataggacatagcatcagaaagaaaagaaaagcaaaacaaagcaaaatatatccaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 aataataggacatagcatcagaaagaaaagaaaagcaaaacaaagcaaaatatatccaga 224

                                                                       
Query: 121 ggggtcttcttttaaagaaattattttttaaaaagatttatttgtttattttatgtatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 ggggtcttcttttaaagaaattattttttaaaaagatttatttgtttattttatgtatat 164

                                                                       
Query: 181 gagtacattgtaactattttcagacacaccagaagagggcattgaatcgcattacagatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 gagtacattgtaactattttcagacacaccagaagagggcattgaatcgcattacagatg 104

                                                                       
Query: 241 gttgtgagccaccatgtagttgctgggaattgaactctggatctctgaaagagcagtcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 gttgtgagccaccatgtagttgctgggaattgaactctggatctctgaaagagcagtcag 44

                                                      
Query: 301 tgctctaaactgctgagccatctcttctgcccctagagtggtt 343
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43  tgctctaaactgctgagccatctcttctgcccctagagtggtt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space:   275844
Effective search space used:   275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)