BAC Information

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BAC

Clone NameMSMg01-378B16
Chromosome3 (Build37)
Map Location 21,819,741 - 22,030,247
singlet/doubletdoublet
Overlap geneLOC100040353, Tbl1xr1, LOC545506
Upstream geneEG665094, LOC100040325, 7530428D23Rik, LOC100039465
Downstream geneLOC675593, LOC100040378, LOC623751
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378B16.T7 (MSMg01no378_b16.b1)MSMg01-378B16.TJ (MSMg01no378_b16.g1)
ACCAG483030AG483031
length792811
length of high quality
(start - end)		481 (52 - 532)376 (80 - 455)
definitionCHROMAT_FILE: MSMg01no378_b16.b1 PHD_FILE: MSMg01no378_b16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:30 2005CHROMAT_FILE: MSMg01no378_b16.g1 PHD_FILE: MSMg01no378_b16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,029,771 - 22,030,247)(21,819,741 - 21,820,116)
sequence
NTTTTTTTTATTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTTGGCCTCTAGACTGCATCTGTATTTAGGTCTAAGGTC
AATTTTCTTCAAGGTCATTTACTGGAGCTGTCATTATCATTATGTTTTCC
TTCCACACGCCCTGGGATTTATTATATCAAGTATCACAAATAAGAGAACA
AGAATATAGCATCTCAAACAGAAAACCCCTTGGAACTCCCTAAGCCAACA
GTCTACAAGACATCTCCCAATACAGAGCAACAGACATCTCATCAACCTTT
AAGAAATACCTATGAGGGGCATTTTCCTATCTCACCACAGCTAAGTGTCA
TGCCTAATTCTGGTGCAACTCACAATATAGAAAACCTCTGTGTGTTACCA
CTTTTCAATCACCTTCAACCTGACTTGTTTCAATGTTCCTGTTTTGATGG
CATTTCCCTTTCTGTTTCCTATTTGGCCCTGCATATCTTGAAGGTCATTT
TATACTCAGCTAATTACTACAGACTATGTCCTGTTGGTAATATTCTTCCC
CTTAAACAAATGCTATAGCACCAAGCACTGACCAAAGCTGGGGAAGAAAG
CCCAAAAGCATGGAAACACCTTCCTGAATCATTCTAACTGCTCTCCTACC
CTCCTCTAAGAAATGCCTCTCCTACTAACCTAAACCTAACTCCTCCCCTC
CAGGTTATCCCAATTGAAGCCTTAATTCAGACACCCGCCAGGTTCCTCCC
CCNAAAACTTCCTAATTTTAAATTGGGGTAAATTTCTATTTC

NCCCCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTACTGTGTTCTACACTCTGA
GAAAATACAGATTCCAAAATCCCAGACAATTACAGAGAAGACTGACTCAG
TTCAATAAACATTTGCTGAAAACTAGCCTTGCGAGAGGTACGGTGATCGG
CTCCAGGGATAAGGGAGAGGGAGTAAGCTTGAAAACAAACAATAAGCTTT
ATAATTAAGTGCTAAATTGTGTGTTGCAGAATCAAGAAGCCTGGAAGAGA
GATAACCAAAGGAGACAGTGGAGCAGCTGAGATTTATAGATGAAGAGAGA
ATTGATCTAGGCTTTGAAGGATGGAAAGGACTTCAATAGGCAAGTGTGGA
ACAGAGCTGGAGAAAACGAAGCCCTGAGTCTTGTATATGCCAGGAAATGA
CAAAGCCAGCCCACTAGAGATGTTCTTCATTGAGGAAATGAGGGCAGGAT
TCCCTTTATGCGGGGGTTTCTTAGGTTTTCCGACCTGAGACAATGTTGAT
TGTTATTCCTCCTTAAAACCTCAAAACACCCGGGTTTACCTCCCCCAATC
TTGTGTAGGAAATCTTCTCACACAATTATTCCCTTCTCCACTACCTATCT
TGTTTCTTTTCCCCTCTTTGCCTGGTTTTTTTCCCCCCTTCGTTCCCCCC
CTTATACCCCCGCCATTTCCTCCAATTCCCCCTCCACCTCTTTTCCCTTT
TTTCCCCTCCCCGCCGCCCTCTCCCCCTTTTTATTTCCTTTTCCCCCACT
TTTTCTCTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_b16.b1 MSMg01no378_b16.b1 CHROMAT_FILE:
MSMg01no378_b16.b1 PHD_FILE: MSMg01no378_b16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:30 2005
         (481 letters)



>mm_chr3_22029567_22030447
          Length = 881

 Score =  884 bits (457), Expect = 0.0
 Identities = 472/477 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttggcctctagactgcatctgtatttaggtctaaggtcaattttcttcaaggt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaattctttggcctctagactgcatctgtatttaggtctaaggtcaattttcttcaaggt 622

                                                                       
Query: 65  catttactggagctgtcattatcattatgttttccttccacacgccctgggatttattat 124
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 621 catttactggagctgtcattatcattatgttttccttccacaagccctgggatttattat 562

                                                                       
Query: 125 atcaagtatcacaaataagagaacaagaatatagcatctcaaacagaaaaccccttggaa 184
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 561 atcaagtatcacaaataagagaacaaggatatagcatctcaaacagaaaaccccttggaa 502

                                                                       
Query: 185 ctccctaagccaacagtctacaagacatctcccaatacagagcaacagacatctcatcaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctccctaagccaacagtctacaagacatctcccaatacagagcaacagacatctcatcaa 442

                                                                       
Query: 245 cctttaagaaatacctatgaggggcattttcctatctcaccacagctaagtgtcatgcct 304
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| 
Sbjct: 441 cctttaagaaatacctatgaggggcatgttcctatctcaccacagctaagtgtcatgcca 382

                                                                       
Query: 305 aattctggtgcaactcacaatatagaaaacctctgtgtgttaccacttttcaatcacctt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aattctggtgcaactcacaatatagaaaacctctgtgtgttaccacttttcaatcacctt 322

                                                                       
Query: 365 caacctgacttgtttcaatgttcctgttttgatggcatttccctttctgtttcctatttg 424
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 caacctgacttgtttcaatgttcctgttttgatggcatttccccttctgtttcctatttg 262

                                                                    
Query: 425 gccctgcatatcttgaaggtcattttatactcagctaattactacagactatgtcct 481
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccctgcatatcttgaaggtcattttatactcagctaattactacagactatgtcct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space:   410241
Effective search space used:   410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no378_b16.g1 MSMg01no378_b16.g1 CHROMAT_FILE:
MSMg01no378_b16.g1 PHD_FILE: MSMg01no378_b16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:31 2005
         (376 letters)



>mm_chr3_21819541_21820316
          Length = 776

 Score =  727 bits (376), Expect = 0.0
 Identities = 376/376 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctactgtgttctacactctgagaaaatacagattccaaaatcccagacaattacagagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctactgtgttctacactctgagaaaatacagattccaaaatcccagacaattacagagaa 260

                                                                       
Query: 61  gactgactcagttcaataaacatttgctgaaaactagccttgcgagaggtacggtgatcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gactgactcagttcaataaacatttgctgaaaactagccttgcgagaggtacggtgatcg 320

                                                                       
Query: 121 gctccagggataagggagagggagtaagcttgaaaacaaacaataagctttataattaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctccagggataagggagagggagtaagcttgaaaacaaacaataagctttataattaag 380

                                                                       
Query: 181 tgctaaattgtgtgttgcagaatcaagaagcctggaagagagataaccaaaggagacagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgctaaattgtgtgttgcagaatcaagaagcctggaagagagataaccaaaggagacagt 440

                                                                       
Query: 241 ggagcagctgagatttatagatgaagagagaattgatctaggctttgaaggatggaaagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggagcagctgagatttatagatgaagagagaattgatctaggctttgaaggatggaaagg 500

                                                                       
Query: 301 acttcaataggcaagtgtggaacagagctggagaaaacgaagccctgagtcttgtatatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acttcaataggcaagtgtggaacagagctggagaaaacgaagccctgagtcttgtatatg 560

                           
Query: 361 ccaggaaatgacaaag 376
           ||||||||||||||||
Sbjct: 561 ccaggaaatgacaaag 576


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 776
Length adjustment: 9
Effective length of query: 367
Effective length of database: 767
Effective search space:   281489
Effective search space used:   281489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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