Query= MSMg01no378_k09.b1 MSMg01no378_k09.b1 CHROMAT_FILE:
MSMg01no378_k09.b1 PHD_FILE: MSMg01no378_k09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:11 2005
(571 letters)
>mm_chr3_128778416_128779386
Length = 971
Score = 988 bits (511), Expect = 0.0
Identities = 554/571 (97%), Gaps = 8/571 (1%)
Strand = Plus / Plus
Query: 5 gaattcttctatctcctactatgattctaacacgaagtaaagaaatcaatgaatccctgc 64
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 205 gaattcttctatctcctagtatgattctaacacgaagtaaagaaagcaatgaatccctgc 264
Query: 65 tctcaggcatccatgatcccaaagagtccttaaaccttttactccttcacctcccacttg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctcaggcatccatgatcccaaagagtccttaaaccttttactccttcacctcccacttg 324
Query: 125 accgactgagtggccacacccattgaaatctctgcca---t-cggcaatcagcatttgtt 180
||||||||||||||||||||||||||||||||| ||| | || |||||||||||||
Sbjct: 325 accgactgagtggccacacccattgaaatctct-ccaaggtacg---atcagcatttgtt 380
Query: 181 tcctgcttccctctactgggaacgctcctccctcgccttgctgaacaaccctacagatcc 240
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 381 ccctgcttccctctactgggaatgctcctccctccccttgctgaacaaccctacagatct 440
Query: 241 ttcaaagctaacttagtgttacctgctctcgttttctcggactaatacctaacccatgaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcaaagctaacttagtgttacctgctctcgttttctcggactaatacctaacccatgaa 500
Query: 301 aggagaagcatccatctatctactgctccgtgtttcctgttcccatagcacttagctaaa 360
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 501 aggagaagcatccatctatctactgctccatgtttcctgttcccatagcacttagctaaa 560
Query: 361 agtgctcatctttttatgtaaggtaaaatgagtcgcttatactgttatatgtcataagac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtgctcatctttttatgtaaggtaaaatgagtcgcttatactgttatatgtcataagac 620
Query: 421 tgtgagatcctggaaggaggagctgctatatcaggaagcatttaaaagaggcaggcagca 480
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 621 tgtgagatcctggaaggaggagctgctatatcaggaagcatttgaaagaggcaggcagca 680
Query: 481 atttgatatacaaattcagtcagtcagtctttcgttgagttcattcaattgggcaaggga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atttgatatacaaattcagtcagtcagtctttcgttgagttcattcaattgggcaaggga 740
Query: 541 aatctcctttctcccaactttttctagctaa 571
|||||||||||||| ||||||||||||||||
Sbjct: 741 aatctcctttctccaaactttttctagctaa 771
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space: 539121
Effective search space used: 539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no378_k09.g1 MSMg01no378_k09.g1 CHROMAT_FILE:
MSMg01no378_k09.g1 PHD_FILE: MSMg01no378_k09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:11 2005
(484 letters)
>mm_chr3_128960173_128961054
Length = 882
Score = 897 bits (464), Expect = 0.0
Identities = 478/484 (98%), Gaps = 4/484 (0%)
Strand = Plus / Minus
Query: 1 agtccccagcactcacgtggcgtctcacaactccagttacagggaatctggcgctctcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 agtccccagcactcacgtggcgtctcacaactccagttacagggaatctggcgctctcct 813
Query: 61 ccgacctctgcaggtatcagacacacaagtggtccatagacatacacacaaacactcata 120
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 812 ccgacctctgcaggtatcagacacacaagtggtccatagac--acacacaaacactcata 755
Query: 121 cacataaaatagatactttaaaaaaaaacaaactaaaacatccaaaagcaaaataaagct 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 cacataaaatagatacttaaaaaaaaaacaaactaaaacatccaaaagcaaaataaagct 695
Query: 181 agaacaaaacaacccacctagcatagtaatttagtgtgcaaaatggtgcacctgtaaatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 agaacaaaacaacccacctagcatagtaatttagtgtgcaaaatggtgcacctgtaaatc 635
Query: 241 tcatgtgttagattagccacttgccacctgacgaggtgggtctcgcttgttggaatgcag 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 tcatgtgttagattatccacttgccacctgacgaggtgggtctcgcttgttggaatgcag 575
Query: 301 tatgcttttaataagagcagaagtctttatcagctactgaaactcttcataaatcttcac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 tatgcttttaataagagcagaagtctttatcagctactgaaactcttcataaatcttcac 515
Query: 361 cttgtgtcatctggtgtttgcttatttgagatataattatatcatgccttttcgggggga 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 cttgtgtcatctggtgtttgcttatttgagatataattatatcatgccttttcgggggg- 456
Query: 421 aaaaaaccccaacctttctcaatatcccttatattattaaaggggacagagggatgaaaa 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 -aaaaaccccaacctttctcaatatcccttatattattaaaggggacagagggatgaaaa 397
Query: 481 cagc 484
||||
Sbjct: 396 cagc 393
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 882
Length adjustment: 10
Effective length of query: 474
Effective length of database: 872
Effective search space: 413328
Effective search space used: 413328
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
