NNNNNCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCATGTCCAATTACATGTAGTTAGATTCCATTAATATGATA
GAGACTTAAGGATAATAAGAATTGGATTGAATGTGTGTATTTATTGGCTT
TAAAAATAGTGAGGCACAAACTTCTGATTATCATCTTGTTCCCATAGAAA
GTGTGGAAACCATAACCTCTATTTAAAAGTAACTCTTTCTTATTTAGGCT
GAAAAAGTGCTTTGAATTGTTTATCTCCTCTCAACCACAGGTGATATTTC
ATAAATTTCAAGTACATTTTTAAAGGAGTACTTTCAAATAATTTTCCATG
CTTCCACTCAGCAGGTAACCTAAACTCTCAGAATCCCTGAATGCTGCACT
TCAAAGTTATGCCCAGGAAAAAAGTACTGAAGAGTACAGCCTTGCTCTCC
AGTTGATTTAAAACACCACTTGCTTATTTTCAGGATACATATGGATTTAC
TTTTGCAAAGAAAGCTTGGAACAGTGCCAGGCTACATCCTGGAAAGACTT
TTCCCCAGAGAGAACTAAAATTCATTATCTGAGTTGCAGGACACCCATGT
TCCTTCAAAGTTTAGACACATCTTTGTTCCTCTATGATCAGTGATAGCAT
TTTTACTGAAAACAACAGCCTGTGATGTGTAGAAAGATTACNAAGACACC
TAACAGCTGCATTGTTTTGAAGTGAAATTGAAAGCTACACACCAGTGTGA
AN

NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACTAATATTTTAAATGAC
TGAATGATATCAATATTTTTAAAGAAACATCTGAGTCACATGATAATGGT
TTCTTAGTACACCATTCTTGACATTGAGGTTGAGAGGGAACAAACAGAAA
AGAATGGATTCATTCAACAAACATTTTAAAACATCAAATAAGAATAAGCA
TGGTGTCTCATACCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGA
TTTCTGAGTTCAAGGCCAGCCTGTTCTACTAAGTGAGTTCCAGGACAGCC
AGGGCTATACAGAGAAACCCTGTCTCGAACCCCCATCCCCCCCCCCAAAA
ATCAAATAAGTGTCAGCTCCTATCTATGTTGGACCAGAAGCTATAACTTT
GAAAAATAATTAAATTACAGCTTCAAGACAACTCACAGACCATATGAAGC
TCAAGAAAAAGGTCGACCAAAGTATGGCTGCTTCAGTCCTACATGAAGGG
GTAACAAAATAATCACAGGAAGGATGTGGGAGGGAGAAGGGAGGGAAATG
AGAGAAGAGGGGAAGNNNNNNNNNNNNNNNNNNNNNNNGNNNNNNGNGNN
NNNGGGGNNGNNTTTTTTTTTTTGTTGTNNNNGGGGGGGGGGNNGTTGTT
TGGTGGTTTTTTTTTTTTTTTTTTTCTTGTTTTTTTGTGGTTTTTTTGGT
TATAT

Query= MSMg01no378_k13.b1 MSMg01no378_k13.b1 CHROMAT_FILE:
MSMg01no378_k13.b1 PHD_FILE: MSMg01no378_k13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:12 2005
         (609 letters)



>mm_chr3_6200257_6201265
          Length = 1009

 Score = 1147 bits (593), Expect = 0.0
 Identities = 602/605 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatgtccaattacatgtagttagattccattaatatgatagagacttaaggataa 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 gaattcatgtccaaatacatgtagttagattccattaatatgatagagacttaaggataa 750

                                                                       
Query: 65  taagaattggattgaatgtgtgtatttattggctttaaaaatagtgaggcacaaacttct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 taagaattggattgaatgtgtgtatttattggctttaaaaatagtgaggcacaaacttct 690

                                                                       
Query: 125 gattatcatcttgttcccatagaaagtgtggaaaccataacctctatttaaaagtaactc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 gattatcatcttgttcccatagaaagtgtggaaaccataacctctatttaaaagtaactc 630

                                                                       
Query: 185 tttcttatttaggctgaaaaagtgctttgaattgtttatctcctctcaaccacaggtgat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 tttcttatttaggctgaaaaagtgctttgaattgtttatctcctctcaaccacaggtgat 570

                                                                       
Query: 245 atttcataaatttcaagtacatttttaaaggagtactttcaaataattttccatgcttcc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 atttcataaatttcaagtacatttttaaaggagtactttcaaataattttccatgcttcc 510

                                                                       
Query: 305 actcagcaggtaacctaaactctcagaatccctgaatgctgcacttcaaagttatgccca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 actcagcaggtaacctaaactctcagaatccctgaatgctgcacttcaaagttatgccca 450

                                                                       
Query: 365 ggaaaaaagtactgaagagtacagccttgctctccagttgatttaaaacaccacttgctt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ggaaaaaagtactgaagagtacagccttgctctccagttgatttaaaacaccacttgctt 390

                                                                       
Query: 425 attttcaggatacatatggatttacttttgcaaagaaagcttggaacagtgccaggctac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 attttcaggatacatatggatttacttttgcaaagaaagcttggaacagtgccaggctac 330

                                                                       
Query: 485 atcctggaaagacttttccccagagagaactaaaattcattatctgagttgcaggacacc 544
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 atcctggaaagacttttctccagagagaactaaaattcattatctgagttgcaggacacc 270

                                                                       
Query: 545 catgttccttcaaagtttagacacatctttgttcctctatgatcagtgatagcattttta 604
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 catgttccttcaaactttagacacatctttgttcctctatgatcagtgatagcattttta 210

                
Query: 605 ctgaa 609
           |||||
Sbjct: 209 ctgaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space:   598401
Effective search space used:   598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)