BAC Information

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BAC

Clone NameMSMg01-378N03
Chromosome3 (Build37)
Map Location 6,960,248 - 6,960,712
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041193, EG620570, LOC100041214, LOC383818, 1700008P02Rik, LOC100039349, Olfr289-ps1
Downstream geneEG667801, Pkia, LOC667807, 3110050N22Rik, Il7, LOC620822
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378N03.T7 (MSMg01no378_n03.b1)MSMg01-378N03.TJ (MSMg01no378_n03.g1)
ACCAG483578AG483579
length742759
length of high quality
(start - end)		519 (47 - 565)557 (78 - 634)
definitionCHROMAT_FILE: MSMg01no378_n03.b1 PHD_FILE: MSMg01no378_n03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:24 2005CHROMAT_FILE: MSMg01no378_n03.g1 PHD_FILE: MSMg01no378_n03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGGATCC
GCGGAATTCTTTCAAAGGTTCCAAAATATGATTCAAGTATTACACAAGCT
GTTATAACCTGAGCTAGACTTGGTTCTGACATTTTTCTATCTCTGATCTC
AACTGTATAAATATTTGTTTACAGTGACTATCATCACAGCACATAGGTAC
ATTCTACTCTGATGCACAGATAGAATAGTAGCAGACTCCAACTTTGAGGG
AGCAAGGAGGTAAAATCCCAGTGAAACAAGATTTTGTGTTATTTTCCATA
CAAACAAAAGCAACGATCTAGAACACACACACACACACACACACACACAC
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGAGAGTCGGCTTTGATTATA
GACATACACTTTACATTTACAGCTATATAGATAAGTTTATACTTGTGAAT
TTATTCCCTAATATATAATACATGTTGCAACCTTTCATTATTGGCAATTA
AATTGATTTAAAACATCTCTATGCTTACCATCTGCCTAGTATTATTCTCT
GTATAACTGCCACCAGTCATGGTTTGTCAGGATGTTTTTGTCATATATCA
TTAACACTGTTATTTTGAGAGATGATTGGGCCTCCCAATTGTCCACTCTT
AGGAGTGATAATATGCCATATTTGCGTGGGTATAATTAAAAG

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGAACTCTTCAGCTGGGGAACGG
TGGTAATAAAGTGTTCCCGCAACACAGACTGTTGAGAAGGATTCAACTGC
ATGAATTCAGAACTCTTCAGCTGGGGAACAGGGGTACCAGTGAGTACAGC
TTTACAAGGTAAGTCTGGTCTTGAACTTTCTAACGAAATTCAAGACAGTC
TATCAGAAGTAAAGTGGGAAATAGCTTTACAAGGTACGCCTGGCCTTGAA
CTTTCTAACGAAATTCAAGACAGTCTATCAGAAGTAAAGTGGGAAATAGC
TTTACAAGGTATGTTTGGCCTTGAACTTTTTCTAGTGTTAGGAGCCTTTT
TGTTCTTTTTCACATGTTATCAAGTGATTAAGATAGGGCTGAAAATTCTG
GATGAAATTCAGGGCAATCTATCAGAAGTAAAGCGGGGAGAGAGAGTAGG
AGCAAAGAGGAAATATGGTACACAAACTAAGTATACAGGCCTTTCCAAGG
GTCTTGAACCCAAGGAAAAGTTAAGGTCAGGTAAGAATACCTGGGGAGAG
ATTAGAAGGAAGGAAAAGAANATAGAAAAGAAAATAGATCAATTAGCGGA
GGTCTCTAGGAGAAGGAGCTCATCACTAGATGAGCTCAAGGAGCCAGCTC
TTAGTAGCTCTGAATCAAATGACGAATTCTCCTCTGAAGAACAGACTGTG
AGGAAGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_n03.b1 MSMg01no378_n03.b1 CHROMAT_FILE:
MSMg01no378_n03.b1 PHD_FILE: MSMg01no378_n03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:24 2005
         (519 letters)



>mm_chr3_6960041_6960959
          Length = 919

 Score =  723 bits (374), Expect = 0.0
 Identities = 454/510 (89%), Gaps = 45/510 (8%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattctttcaaaggttccaaaatatgattcaagtattacacaagctgttataacctgag 67
           |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 208 gaattccttcaaaggttccaaaatatgattcaagtatttcacaagctgttataacctgag 267

                                                                       
Query: 68  ctagacttggttctgacatttttctatctctgatctcaactgtataaatatttgtttaca 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ctagacttggttctgacatttttctatctctgatctcaactgtataaatatttgtttaca 327

                                                                       
Query: 128 gtgactatcatcacagcacataggtacattctactctgatgcacagatagaatagtagca 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gtgactatcatcacagcacataggtacattctactctgatgcacagatagaatagtagca 387

                                                                       
Query: 188 gactccaactttgagggagcaaggaggtaaaatcccagtgaaacaagattttgtgttatt 247
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gactccaactttgagagagcaaggaggtaaaatcccagtgaaacaagattttgtgttatt 447

                                                                       
Query: 248 ttccatacaaacaaaagcaacgatctagaacacacacacacacacacacacacacacaga 307
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 448 ttccatacaaacaaaagcaacgatctagaacacacacacacacacacacacacacacaca 507

                                                                       
Query: 308 gagagagagagagagagagagagagagagagagagagagagagagagagagagagagaga 367
            | | | | | | ||||||||||||||||||||||||                       
Sbjct: 508 cacacacacacacagagagagagagagagagagagag----------------------- 544

                                                                       
Query: 368 gagagagagagagaagagagagtcggctttgattatagacatacactttacatttacagc 427
                                 ||||||||||||||||||||||||||||||||||||||
Sbjct: 545 ----------------------tcggctttgattatagacatacactttacatttacagc 582

                                                                       
Query: 428 tatatagataagtttatacttgtgaatttattccctaatatataatacatgttgcaacct 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 tatatagataagtttatacttgtgaatttattccctaatatataatacatgttgcaacct 642

                                         
Query: 488 ttcattattggcaattaaattgatttaaaa 517
           ||||||||||||||||||||||||||||||
Sbjct: 643 ttcattattggcaattaaattgatttaaaa 672


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 74
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space:   462681
Effective search space used:   462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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