XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
CAAGGTTCCAATGAAACAGCTTAGCCAAGTTTTAAAATCTTCAAAAGGCT
TCTACCCTGACCTTTAGTGGAAGTACCTACAGATTCTCAGTCCCAAGGGT
GTGCCTGCATCCTGCATTTCATACTCATAAAAGGACTTTTCTCTGGAAAG
ATGGCTTTACATCACCTGTCATATCCAAGAAGAATCGCCAGCTATTCCGT
TCAATGTTCCTAATTGTTGTCAGAAAATGACCTAAAACTCTGACACAGAA
TTTTTCAAAGTCAGGCTTCCACAAGGCACGTACATTTATCAACGTTTACG
CCACATGCACCTAAGCTGCAGCACTTGTGAAGGTCTGTTTTTATTTAATT
CTCAAGATTTTGTTGTTAATGGGAAAACTGTCTCATAAATTAAGGAAGTG
CTCAATTACAGTCCTGACAGAGATTGATTCCCATTTCGCTGCTGGTCAGT
ACCAGCAAGTGAAGGCCAAGGAAACCACAACTCCTGCTAATGCTGGCACC
ACTTCAAAGGTGACCATGAACAAGTGGTCATTACCAATTAAGATAGTGCT
TGGCCACAAGCCTGGGAACTGTTTGTATTTGATAGCGACCATCTGTGTGA
AAATTCTTTCATTGTGTGGGTATGGATGCCCATGGAAAAAAAACCACTTC
ACAAGGATTGGCAATTCCTTTTGTTAAAAAAGGGTTTATTGGCCAATAAA
AACCCCTTTTGAGCCCCACCTT

ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCA
CCTGAAAAAATGTTCAACATCCTTATTCATCAGGGAAATGCAAATCAAAA
CAAACCTGAGATCCCACCTCACACCAGTCACAATGGCTAAGATGAAAAAT
TCAGGTGACAGCAGATGCTGTTGAGGATGTGGAGAAAGAGGAACACTCCT
CCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCT
GGCAGTTCCTTAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATA
CCACATCTGGGCATATATCAAGAAGATGTCCCAACCTGTATGAAGGACAC
ATGCTCCACTATGTTCATAGAGCCTTATTTATAATAGCCAGAAGCTGGAA
AGAACCCAGATGCCCATCAACAGAGGAATGGATAGAGAAAATGTGGTACA
CTTACACACTGGAGTACTACTCAGCTATTTAAAAGAATGAATTTATGAAA
TTCCTAGACCAATGGATGGACCTGCAGGGCATAATCCTGAGTGAGGGAAC
CCCCTCCCCAAGGAAATTCCCCAATATGTACCCCCTGCGAAGGGGGAATT
ACCCCCTTCCTTCAGACTCCCCTGATAACTTATACAATTTGTCTCCCGCG
TGGTTTCTTTCCTATCAGAAAACCAAGGGGGTGACTTTGGTAGCTCCTAT
AACCTGTGTAACTAACAACACCGCG

Query= MSMg01no379_f16.b1 MSMg01no379_f16.b1 CHROMAT_FILE:
MSMg01no379_f16.b1 PHD_FILE: MSMg01no379_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:06 2005
         (484 letters)



>mm_chr3_4582516_4583399
          Length = 884

 Score =  899 bits (465), Expect = 0.0
 Identities = 477/481 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaaacagcttagccaagttttaaaatcttcaaaaggcttctaccctgacctttagtgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 681 tgaaacagcttagccaagttttaaaatcttcaaaaggcttctaccctgaccttcagtgga 622

                                                                       
Query: 61  agtacctacagattctcagtcccaagggtgtgcctgcatcctgcatttcatactcataaa 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 621 agtacctacagattctcagtcccaagggtatgcctgcatcctgcatttcatactcataaa 562

                                                                       
Query: 121 aggacttttctctggaaagatggctttacatcacctgtcatatccaagaagaatcgccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggacttttctctggaaagatggctttacatcacctgtcatatccaagaagaatcgccag 502

                                                                       
Query: 181 ctattccgttcaatgttcctaattgttgtcagaaaatgacctaaaactctgacacagaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctattccgttcaatgttcctaattgttgtcagaaaatgacctaaaactctgacacagaat 442

                                                                       
Query: 241 ttttcaaagtcaggcttccacaaggcacgtacatttatcaacgtttacgccacatgcacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttcaaagtcaggcttccacaaggcacgtacatttatcaacgtttacgccacatgcacc 382

                                                                       
Query: 301 taagctgcagcacttgtgaaggtctgtttttatttaattctcaagattttgttgttaatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taagctgcagcacttgtgaaggtctgtttttatttaattctcaagattttgttgttaatg 322

                                                                       
Query: 361 ggaaaactgtctcataaattaaggaagtgctcaattacagtcctgacagagattgattcc 420
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaaaactgtctcataaattagggaagtgctcaattacagtcctgacagagattgattcc 262

                                                                       
Query: 421 catttcgctgctggtcagtaccagcaagtgaaggccaaggaaaccacaactcctgctaat 480
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 catttcgctgctggtcagtaccagcaagtgaaggccgaggaaaccacaactcctgctaat 202

            
Query: 481 g 481
           |
Sbjct: 201 g 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space:   414276
Effective search space used:   414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)