Query= MSMg01no380_a24.b1 MSMg01no380_a24.b1 CHROMAT_FILE:
MSMg01no380_a24.b1 PHD_FILE: MSMg01no380_a24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:01 2005
(584 letters)
>mm_chr3_75926104_75927087
Length = 984
Score = 748 bits (387), Expect = 0.0
Identities = 393/395 (99%)
Strand = Plus / Minus
Query: 189 gggtgttttcggaggggaaaccaggaaaggggataacatttgaaatgtaaatatagaaaa 248
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 984 gggtgtttttggaggggaaaccaggaaaggggataacatttgaaatgtaaatatagaaaa 925
Query: 249 tatctaataaaaaattctttaccaaactgttatcacatgaaatttgaaataatctaaact 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924 tatctaataaaaaattctttaccaaactgttatcacatgaaatttgaaataatctaaact 865
Query: 309 tgtgttcatagactttggctgtgtttgccttcagaataaactaatctcttctcatcttta 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 tgtgttcatagactttggctgtgtttgccttcagaataaactaatctcttctcatcttta 805
Query: 369 aggtctgagttgtgattcttggcaacacagggttgtctctataggcatagcatcagaata 428
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 aggtctgagttgtgattcctggcaacacagggttgtctctataggcatagcatcagaata 745
Query: 429 tgttctgtacctttaacatgtgagacccattgaaagcccacggagggtaccctcaaaggg 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tgttctgtacctttaacatgtgagacccattgaaagcccacggagggtaccctcaaaggg 685
Query: 489 aactggggagccaaggctctttcactgtctctccctgtgttgacatgtgatgtcaactta 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aactggggagccaaggctctttcactgtctctccctgtgttgacatgtgatgtcaactta 625
Query: 549 cactccatcactattgtgctgctccatcaacagac 583
|||||||||||||||||||||||||||||||||||
Sbjct: 624 cactccatcactattgtgctgctccatcaacagac 590
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space: 559076
Effective search space used: 559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no380_a24.g1 MSMg01no380_a24.g1 CHROMAT_FILE:
MSMg01no380_a24.g1 PHD_FILE: MSMg01no380_a24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:01 2005
(549 letters)
>mm_chr3_75859726_75860673
Length = 948
Score = 1013 bits (524), Expect = 0.0
Identities = 546/558 (97%), Gaps = 10/558 (1%)
Strand = Plus / Plus
Query: 1 cataggaagaaca-cagagtcaatgaacttggatccttggggttctcagaaactgagcca 59
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 cataggaagaacaacagagtcaatgaacttggatccttggggttctcagaaactgagcca 251
Query: 60 ccaactaaagaacatacatggactgtatttagatctctctgcaaatatctagcagacaca 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ccaactaaagaacatacatggactgtatttagatctctctgcaaatatctagcagacaca 311
Query: 120 caccttggtcttcatgtaggttccaaacaactggagccagggctatcccaaaagctgttg 179
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 caccttggtcttcatgtgggttccaaacaactggagccagggctatcccaaaagctgttg 371
Query: 180 cctgtacatgggatatgttcttctagctgggctaccttgtctggcctcactgggagaaga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 cctgtacatgggatatgttcttctagctgggctaccttgtctggcctcactgggagaaga 431
Query: 240 ttagcttagcctgacagacttgatgtgccagggtcgaggatacccagggagcccccaccc 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 432 ttagcttagcctgacagacttgatgtgccagggtcgaggatacccagggagccctcaccc 491
Query: 300 attcagaggagaagagggtggagtgggaggaaggattgtaggaaggggtaactgggaggg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 attcagaggagaagagggtggagtgggaggaaggattgtaggaaggggtaactgggaggg 551
Query: 360 cataatgagtaaaatgtgaaattaataagtaaaaatataaataaataaataaataaataa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 cataatgagtaaaatgtgaaattaataagtaaaaatataaataaataaataaataaataa 611
Query: 420 ataaataa--------ttcaccaatacttttgagaatatagtcaggtataaaattattag 471
|||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ataaataaataaataattcaccaatacttttgagaatatagtcaggtataaaattattag 671
Query: 472 gatatataataatcctatttttattttttaggaatccttatagtattataactatcgtaa 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 gatatataataatcctatttttattttttaggaatccttatagtattataactatcgtaa 731
Query: 532 tactttgtattttccagc 549
|||||||||||| |||||
Sbjct: 732 tactttgtattt-ccagc 748
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 948
Length adjustment: 10
Effective length of query: 539
Effective length of database: 938
Effective search space: 505582
Effective search space used: 505582
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
