XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ATGATTCTCCGAATACTTGGCTGCTTAGAGACACAGTCATTCACTGCTTC
AGGCATGTTTACTGTTATTCATGCACATAAATGCATCAATCCTATCCAAA
TGCACATGTGTAAGTTCCCCAGAAGCAGGAAGCTCTTCACTGGAGTTCTA
TCTTTTATACGACTCTTCACTGTTTTGGATGGTGAGACAGAGATAGACAG
GAGAGAGAGGAGGGCAGGGGAGAATTTGTTCAGTGGATACACAGTGAATG
CATATGTGAAGAATATTTAAAATAAATTGATGAGAATTTTACAACGTATT
TTAAATACATTTATAAAAGTTTGTTTTAGGACCCTTAGCATTTGAAATAA
AAGTCACTGCTTCCCTTATTCTACCTCCAAAATCATAGTTACAATCTCAA
AATGTCAGTAGGAAAACATACATGAAAGGGGGGGGACTATTAACTGTCTT
TAGTTTTTGCCCTTTATTTAGAAAGCCAGCCAGAAATGAAAACTGTGTTC
TTATATTTGACCCATTTCCAGCGGTGAAGAAACATGTACTCTGTCCCTGA
ATGCCAGCCACCAGCATAGATTATGGCTTGTTCCAACAAGGTGGCAGTTC
AGTTCCAAAAAAAAACATGTGTATTATGCCTATANGAAACCAAGACAATA
TGACGCTTCATTACCCTTATCCCAAGAGCTCAGGAATTTTTTAN

GATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGC
ACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAA
ACAACCCTGAGATTACACCTCACACCAGTCAGAATGTCTAAGATCAAAAA
TTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCC
TCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCGTC
TGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAAT
ACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACA
CATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGG
AAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTA
CATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGA
AATTCCTAGCCAAATGGATGGACCTGNAGGGCATCATCCTGAGTGAGGNT
ACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGGGGATA
TTAGCCCCAAACCTAGGATACCCCAGATATAAGATACCATTTTCCTAAAC
CCTGAAGATCTCGAAAAAAGAAAACTGAAGGGGGGACACTATTCCCCCTC
TTA

Query= MSMg01no380_e16.b1 MSMg01no380_e16.b1 CHROMAT_FILE:
MSMg01no380_e16.b1 PHD_FILE: MSMg01no380_e16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:19 2005
         (565 letters)



>mm_chr3_3554141_3555106
          Length = 966

 Score = 1011 bits (523), Expect = 0.0
 Identities = 553/563 (98%), Gaps = 1/563 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcatgattctccgaatacttggctgcttagagacacagtcattcactgcttcagg 63
           |||||||||||  ||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 ggaattcatgacactgtgaatacttggctgcttagagacacagtcattcactgcttcagg 707

                                                                       
Query: 64  catgtttactgttattcatgcacataaatgcatcaatcctatccaaatgcacatgtgtaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 catgtttactgttattcatgcacataaatgcatcaatcctatccaaatgcacatgtgtaa 647

                                                                       
Query: 124 gttccccagaagcaggaagctcttcactggagttctatcttttatacgactcttcactgt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 gttccccagaagcaggaagctcttcactggagttctatcttttatacgactcttcactgt 587

                                                                       
Query: 184 tttggatggtgagacagagatagacaggagagagaggagggcaggggagaatttgttcag 243
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 586 tttggatggtgagacagagatagacaggagagagaggagggcaggggagattttgttcag 527

                                                                       
Query: 244 tggatacacagtgaatgcatatgtgaagaatatttaaaataaattgatgagaattttaca 303
           |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct: 526 tggatacacagtgaatgcatatttgaagaatagttaaaataaattgatgagaattttaca 467

                                                                       
Query: 304 acgtattttaaatacatttataaaagtttgttttaggacccttagcatttgaaataaaag 363
           | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 atgtattttgaatacatttataaaagtttgttttaggacccttagcatttgaaataaaag 407

                                                                       
Query: 364 tcactgcttcccttattctacctccaaaatcatagttacaatctcaaaatgtcagtagga 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 tcactgcttcccttattctacctccaaaatcatagttacaatctcaaaatgtcagtagga 347

                                                                       
Query: 424 aaacatacatgaaa-ggggggggactattaactgtctttagtttttgccctttatttaga 482
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 aaacatacatgaaagggggggggactattaactgtctttagtttttgccctttatttaga 287

                                                                       
Query: 483 aagccagccagaaatgaaaactgtgttcttatatttgacccatttccagcggtgaagaaa 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 aagccagccagaaatgaaaactgtgttcttatatttgacccatttccagcggtgaagaaa 227

                                  
Query: 543 catgtactctgtccctgaatgcc 565
           |||||||||||||||||||||||
Sbjct: 226 catgtactctgtccctgaatgcc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 966
Length adjustment: 10
Effective length of query: 555
Effective length of database: 956
Effective search space:   530580
Effective search space used:   530580
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)