BAC Information

Click to search

BAC

Clone NameMSMg01-380J22
Chromosome3 (Build37)
Map Location 17,244,973 - 17,245,488
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040034, LOC100040059, EG383936, LOC622737
Downstream geneENSMUSG00000074674, LOC100040120, Cypt12, LOC545508, Bhlhb5, Cyp7b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380J22.T7 (MSMg01no380_j22.b1)MSMg01-380J22.TJ (MSMg01no380_j22.g1)
ACCAG484952AG484953
length745742
length of high quality
(start - end)		520 (41 - 560)528 (71 - 598)
definitionCHROMAT_FILE: MSMg01no380_j22.b1 PHD_FILE: MSMg01no380_j22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:45 2005CHROMAT_FILE: MSMg01no380_j22.g1 PHD_FILE: MSMg01no380_j22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ATAAGCTTTCTGCCTTCTTTGTGCCTCAAAGTATTTTGGAAAGAAATTTA
AAATGCACAGATCCTTGAAAGTACTTTGAGTTTCTACAAACTTAGAAAAC
ACAGGTGTAAGGTATTCTATAGCATCCATTTCACTTACCAAGAGCAAATT
ACAACTAGATGATGTGGTAGGTGTGTCATGTTGAAAGGGTGCTTCATGCT
GACACACTCTGTCTCTGTCCATTCTTATTTCTATGATATAGGAAGGTTTG
GATTTTCCTTTCAGTGTTAGACCACTTTTCCAACATTTATATGCCTAGTC
TTTCTGTTTTTTCTTCCCTGAGTAGTATCCAGGATCACGCCATGACCTCT
TGCTTATTATGCAATCAATCTAATATGCTACATGCCAGCTTTAGCACTGT
CCATTTATTTTCTTATTTTTTCAGCTATTAATTTTTAAAGTATTTGAGCA
TTTAGTCATGAGAACGTTGTAATTTGCATCATTTCCATAAATTCCTTCTT
CCTATTTATGGGTTTATGTATAAGTACATATTAATTTGTTAAACACACAC
ACACAACTTGGTGTCCATTTTTTATTTTTGGATGCGTTTACAGTTAATCA
CTTAAGACTGCGGCTTTGTCCCTGTAACACACAAAAAGTAAACTTGTTCT
TCTATTCCAGAAAATGGCTATCTTAAGGTCTTTCTGTAAGGGTGG

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCACATGAGGAATACCTAATGGCAGAGAAG
CACCTGAAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCA
AAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAA
AATTCAAGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACT
CCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAG
TCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCA
ATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGC
CACATGCTTCACTATGTTCATAACAGCCTTATTTATAATAGCCAGAAGCT
GGAAAGAACCCAGATTCCCCTCAACAGAGGAATGGATACAGAAAATGTGG
TACATCTACAAAATGGAGTACTACTCAGCTATTAAAAAGGATGAATTTAT
GAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGG
TAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGA
TATTAGCCCCAAACCTAGGATCCCAAGATATAAGATACAATTGCTAAACA
CTGAAACTCCATAAAAATGAAAACGCAAGGTGGACCCTAGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_j22.b1 MSMg01no380_j22.b1 CHROMAT_FILE:
MSMg01no380_j22.b1 PHD_FILE: MSMg01no380_j22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:45 2005
         (520 letters)



>mm_chr3_17244769_17245688
          Length = 920

 Score =  967 bits (500), Expect = 0.0
 Identities = 512/516 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcataagctttctgccttctttgtgcctcaaagtattttggaaagaaatttaaaat 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 gaattcataagctttttgccttctttgtgcctcaaagtattttggaaagaaatttaaaat 661

                                                                       
Query: 65  gcacagatccttgaaagtactttgagtttctacaaacttagaaaacacaggtgtaaggta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 gcacagatccttgaaagtactttgagtttctacaaacttagaaaacacaggtgtaaggta 601

                                                                       
Query: 125 ttctatagcatccatttcacttaccaagagcaaattacaactagatgatgtggtaggtgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 ttctatagcatccatttcacttaccaagagcaaattacaactagatgatgtggtaggtgt 541

                                                                       
Query: 185 gtcatgttgaaagggtgcttcatgctgacacactctgtctctgtccattcttatttctat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 gtcatgttgaaagggtgcttcatgctgacacactctgtctctgtccattcttatttctat 481

                                                                       
Query: 245 gatataggaaggtttggattttcctttcagtgttagaccacttttccaacatttatatgc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gatataggaaggtttggattttcctttcagtgttagaccacttttccaacatttatatgc 421

                                                                       
Query: 305 ctagtctttctgttttttcttccctgagtagtatccaggatcacgccatgacctcttgct 364
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ctaatctttctgttttttcttccctgagtagtatccaggatcacgccatgacctcttgct 361

                                                                       
Query: 365 tattatgcaatcaatctaatatgctacatgccagctttagcactgtccatttattttctt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tattatgcaatcaatctaatatgctacatgccagctttagcactgtccatttattttctt 301

                                                                       
Query: 425 attttttcagctattaatttttaaagtatttgagcatttagtcatgagaacgttgtaatt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 attttttcagctattaatttttaaagtatttgagcatttagtcatgagaacgttgtaatt 241

                                               
Query: 485 tgcatcatttccataaattccttcttcctatttatg 520
           || || ||||||||||||||||||||||||||||||
Sbjct: 240 tgtataatttccataaattccttcttcctatttatg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |