BAC Information

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BAC

Clone NameMSMg01-381L20
Chromosome3 (Build37)
Map Location 14,872,123 - 14,872,555
singlet/doubletsinglet
Overlap geneCar3
Upstream gene0710005M24Rik, EG622229, LOC668062, Slc7a12, LOC668068, Lrrcc1, E2f5, 1810022K09Rik, LOC100039929, Car13, EG545507, Car1, LOC100041785
Downstream geneCar2, EG634323, LOC100039985, LOC751864, Sirpb1, LOC668101, LOC100038947, LOC622425, LOC664795, LOC381484
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-381L20.T7 (MSMg01no381_l20.b1)MSMg01-381L20.TJ (MSMg01no381_l20.g1)
ACCAG485809AG485810
length694784
length of high quality
(start - end)		539 (35 - 573)437 (67 - 503)
definitionCHROMAT_FILE: MSMg01no381_l20.b1 PHD_FILE: MSMg01no381_l20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:15 2005CHROMAT_FILE: MSMg01no381_l20.g1 PHD_FILE: MSMg01no381_l20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGTT
CTGCTCTGAGCCCCATTTTTTAAATGGGGTTGTTCGATGATACTTTTTCT
TAAGATGACTTACAGTTAAAACGTTCTTCACAACTTTAGTGTTGTGAAAA
AATTGCCTGTACTATAGTTTCCTGCCAGGCAGCAACTATAACCAAACTGT
TTGTCTAATCTATTTACAAAGACAAACATAACTAGATAACTCTGTCACAG
TTTTGTATGAAGTGAGCTGTATGAGTGCTCTCATAAGATGATTACTCTTG
TAATTATCTTAATTACAGTATACAGGTGAATTAAAGATCTTAAATTTGAA
ATCAAACTGCAAGCTGCAGTCAATGGAACAATAGCAGTTTTAACCATAAT
TTTTAAGTTTTTTGTGTAAGGTTAGGATAATACCTATAACCTTGGGAAAG
CAAAACCCAAGTTTAAAACAATTTATTATCTTTAAAATCAATATTAGAAA
CATTACTATCATATTACGGAGTTTGGATGTCAATTAATACCTATGAATAC
CTATTAAAGCAAGCTTTAATGCTTTAATAAAGAGGCATTGCTTTAAATCC
TATCTTAAATTTTACTATTTAGGATACGAACCACATTATTATTACCTAAA
CTAGAATATCTTTANAGACCCACGCCTCTTGGGTTGCCTAATGC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXATAATGTGTTTTACCTCAAATAATACCAGCGATA
ATCCATCACTCGTTAAAAATTTGCCTACTACCAAGTTTGCCTGGTTTTAA
TCACCTATAAAACACACCCATAAGGCCAGGTGTTTTAAAATGTTTGATCC
AGCATTTAAATTTCTTCTTCATAAAGATGGTTTTCTTTGCCCAAAGTAGA
GCCATTTATTTTTTATTTCACTACTTTAATCTTTGCATGCCTATTAAAAA
CAAAAACAAACAAACAAAAAAACAAAAACAGCAACAACAACAACAACAAA
AAACTGTGTCAGGTGTCTTTTGAGTTGGAGGCTGGGATGTCTGGTTCCTG
GAACAGGAAGGAGGGAATGTCAACACTGAAGCCAAGAGCTTGCGTTGATC
ACAGAAACAATAAAAGACAGATGGCAAATGAAAAGAATGTGTGTCTTTTC
CTTAAACTGAAAATTCAGAGTAAGTCACTTGTTTTAAGGTAACATATGAA
GTGACAAGCTTCACTATGGCAGTGTCATTCGTGTTAGTGATTACACTTAG
TTATAACTCAGCCCTCCATCACTGCCCTCTCCAGTGACAGCTTCCACAAA
GTCCCCTCCTCTGCTTTAAAAGAAATCCATTGGGCTTCTTCTTTAGAAAC
CTTCTCCCCCTCCTGATCCCTTTCTAGTTTCCCAACTACCCTATATGTCA
CCCCCCAAAAATTTAATTCTGATTTATTGAAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no381_l20.g1 MSMg01no381_l20.g1 CHROMAT_FILE:
MSMg01no381_l20.g1 PHD_FILE: MSMg01no381_l20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:15 2005
         (437 letters)



>mm_chr3_14871923_14872759
          Length = 837

 Score =  768 bits (397), Expect = 0.0
 Identities = 426/441 (96%), Gaps = 12/441 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataatgtgttttacctcaaataataccagcgataatccatcactcgttaaaaatttgcct 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataatgtgttttacttcaaataataccagcgataatccatcactcgttaaaaatttgcct 260

                                                                       
Query: 61  actaccaagtttgcctggttttaatcacctataaaacacacccat-aaggccaggtgttt 119
           ||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||
Sbjct: 261 actaccaagtttgcctggttttagtcacctataaaacacacccatgaag-ccaggtgttt 319

                                                                       
Query: 120 taaaatgtttgatccagcatttaaatttcttcttcataaagatggttttctttgcccaaa 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 taaaatgtttgatccagcatttaaatttcttcttcataaagatggttttctttgcccaaa 379

                                                                       
Query: 180 gtagagccatttattttttatttcactactttaatctttgcatgcctattaaaaacaaaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gtagagccatttattttttatttcactactttaatctttgcatgcctattaaaaacaaaa 439

                                                                       
Query: 240 acaaacaaacaaaaaaa---caaaaacagcaacaacaacaacaacaaaaaactgtgtcag 296
           |||||||||||||||||   ||||||||||||||||||       |||||||||||||||
Sbjct: 440 acaaacaaacaaaaaaaaaacaaaaacagcaacaacaa-------aaaaaactgtgtcag 492

                                                                       
Query: 297 gtgtcttttgagttggaggctgggatgtctggttcctggaacaggaaggagggaatgtca 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gtgtcttttgagttggaggctgggatgtctggttcctggaacaggaaggagggaatgtca 552

                                                                       
Query: 357 acactgaagccaagagcttgcgttgatcacagaaacaataaaagacagatggcaaatgaa 416
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 553 acactgaagccaagagcttgcattgatcacagaaacaataaaagacagatggcaaatgaa 612

                                
Query: 417 aagaatgtgtgtcttttcctt 437
           |||||||||||||||||||||
Sbjct: 613 aagaatgtgtgtcttttcctt 633


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space:   354384
Effective search space used:   354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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