XXXXXXXXXXXXXXXXXXXXXXXXTCCGAGATGATCCGCGGAATTCATTT
TTTTCGTATTTTATGAAGATGGGTTTCTTGTCTGCATGTTTATATCCTGT
GCACAGTGTGCATGTCTAGTGTCCATGGCCGCCAAAGTTGGGTGTCAGAT
GCCCAGGGGACTGGAATTACAGATGGTTGTGAGCCAGTATGTGGGTGTTG
AGTCTCAAACCTAGGTCCTCTCCAAGAGCAACCAATACCTTTAACTGACT
GAGACATTGCTCCAGCCCTCTTTCTTGTTTCATTTTCAGGATGAATCAAG
GCTGCCTCATATTTTCTAATCTTGTCCTCAATCCCTCACCTAAAATAGTT
AGCTGGGTACAGGGACATCTCAGGAAACCTGGGGATGGGAGGGGGGTGGA
CATTCCAGGGCTCTGGTAACCATCTACCTGTGATATAGGTAGACTTGTCT
GGCGGAATCATAAATCCCTGGCAAAACAGGAGCTGATAATATGGTCTCCA
TCTGATGTCCCAGACCATATGATTACCTGAGCTCTTGTGTTTGTCTTTTC
CACCTTCTACAGATGCCTTATAGTTAACAGCGGATTGTGCGCGTTTTTTG
GCCAATCCTTTATTTTATTACTCCCATTTTTTTAGTCATTGTTTTGCCCC
CCCTTATTTCCCTTTGCCATTCCCCTCTTTTTTTTTCACCGCCCTTTCTT
TTAACCATTATTTCTCTTACNATATCCCCCTTCTTCTTG

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCTGTTTAGCGCTATGTGCCATTTTTAAAATT
GGGTTTTTTTTTGGAGTCTAACTTCTTGAGTTCTTTATATATTTTAGATA
TTAGCCCTCTGTCTGATGTAGATCTTTTCCTAACCTGTAGGCTGCCACTG
CTTCCTATGGACAGTGTCCTTTGCCTTATAGAAGCTTTTCAGTTTTGTGA
GGTCCCATTTATCAATTGTTGATCATAGAGCCTGAGCCATTGGTGTTCTG
TTCAGGAAATTGTCTCCTGCTTTCAAGGCTATTCTCCATTTTCTGTTCTA
TTAGATTTAGTGTATCCAGTTTTATGTTGAGGTCCTTGATCCACTTGGAC
TTGAGTTTGGTGCAGGGTGATAAATAGAGATCTATTTACATTCTTCTTCA
TGCAGATATCCAGTTAGACCAGCACGTGGGCATATACTCAGAATGTACAC
CCCACCATACGATAAAGACATGTGCTCCAATATGTTCATAGCAGCTTTAT
TCATAGTAGCCAGAAACTGGAAACACCCAGGCATTTCCTCACCCAAGGAA
TAGATACAGAACCCGTGATTGATTCCTTTATACAATGGAAAACTGTTCCG
CTTTTAAAAAGAGGACTTCCTGGAATTTGCCCGCCAATGGGTGGGACCAG
AAAAATTCCCGAGCAAGTAACCCCAACCCCCCCGATATTCTGGGTTGGGC
CCCCCGCAAGTGGAAAAATGCCN

Query= MSMg01no381_m14.b1 MSMg01no381_m14.b1 CHROMAT_FILE:
MSMg01no381_m14.b1 PHD_FILE: MSMg01no381_m14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:18 2005
         (410 letters)



>mm_chr3_50695808_50696617
          Length = 810

 Score =  745 bits (385), Expect = 0.0
 Identities = 400/405 (98%), Gaps = 2/405 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcattttt-ttcgtattttatgaagatgggtttcttgtctgcatgtttatatcctg 65
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcatttttctt-gtattttatgaagatgggtttcttgtctgcatgtttatatcctg 265

                                                                       
Query: 66  tgcacagtgtgcatgtctagtgtccatggccgccaaagttgggtgtcagatgcccagggg 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tgcacagtgtgcatgtctagtgtccatggccgccaaagttgggtgtcagatgcccagggg 325

                                                                       
Query: 126 actggaattacagatggttgtgagccagtatgtgggtgttgagtctcaaacctaggtcct 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 actggaattacagatggttgtgagccagtatgtgggtgttgagtctcaaacctaggtcct 385

                                                                       
Query: 186 ctccaagagcaaccaatacctttaactgactgagacattgctccagccctctttcttgtt 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ctccaagagcaaccaatacctttaactgactgagacattgctccagccctctttcttgtt 445

                                                                       
Query: 246 tcattttcaggatgaatcaaggctgcctcatattttctaatcttgtcctcaatccctcac 305
           ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||
Sbjct: 446 tcattttcaggatgaatcaaggctgcctcataaagtctaatcttgtcctcaatccctcac 505

                                                                       
Query: 306 ctaaaatagttagctgggtacagggacatctcaggaaacctggggatgggaggggggtgg 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ctaaaatagttagctgggtacagggacatctcaggaaacctggggatgggaggggggtgg 565

                                                        
Query: 366 acattccagggctctggtaaccatctacctgtgatataggtagac 410
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 acattccagggctctggtaaccatctacctgtgatataggtagac 610


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space:   321201
Effective search space used:   321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)