BAC Information

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BAC

Clone NameMSMg01-381N03
Chromosome3 (Build37)
Map Location 37,424,087 - 37,600,076
singlet/doubletdoublet
Overlap geneSpata5, LOC665778, Spry1
Upstream geneLOC665709, Exosc9, Ccna2, Bbs7, Trpc3, 4932438A13Rik, Tenr, LOC652987, Il2, Il21, Cetn4, Bbs12, LOC100041328, Fgf2, LOC100040649, Nudt6
Downstream geneEG381438, LOC100038875, LOC100041338, EG626367, 4930556A17Rik, LOC665811, EG665821, LOC100041366, LOC100040785, LOC665838, Ankrd50, LOC100041378, LOC665855, LOC100040824
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-381N03.T7 (MSMg01no381_n03.b1)MSMg01-381N03.TJ (MSMg01no381_n03.g1)
ACCAG485871AG485872
length723745
length of high quality
(start - end)		512 (35 - 546)552 (74 - 625)
definitionCHROMAT_FILE: MSMg01no381_n03.b1 PHD_FILE: MSMg01no381_n03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:21 2005CHROMAT_FILE: MSMg01no381_n03.g1 PHD_FILE: MSMg01no381_n03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,424,087 - 37,424,594)(37,599,525 - 37,600,076)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGCT
TATTTTTATTTCCAGGTTGTATTTGAGTCTTCTGATATATTTTCAAGTAA
GGGAGCTTTTACTGTTCATTATACAGTAGCAACCAAGTTTTTAAAATACT
AAACTTATGCTGTGTAGGCTTGGTAAAAAATCCTTTTATAGGATTTTATT
TATTTATCTAACTTTTAGAATTTACATATAAACATGATCTTCAGGGGTTT
TTTAAACTTAACTTTTTACTTTACATGTTATATATACTATACTCTCTTTC
TTCCTTACTGCTCTATTAGAATCTTCAGTACAAGAAATGATAGGTAGCAG
TCAATATTTCAATGTTAAATACATCTCTAGCTGCAGGTACTCAGTAAGTA
AATACCTTTTCTCATGTTGAAGGAAATCCCCTCTATTCTCAGTTTGATGA
GTTTAGTGTCATCAGTAGCTCTTGATTTGATTGCCAAGCGCTTTTTTTTC
TGCATATATCAAAATGGTCATAGTTTTTCTACTTTTTAAATAAGTACAAT
GAAGTATTCTCATAAAATTCAAATACTTGCCCAACCCTCTGGTTCCAGAG
ATAACTCTTACTTGGCCTTTGATTATTATCCGATTTGTAAATCAGACCCT
GTTTTGCCCCTGTTTTTGACGATCATGTGGTCTCTTGTTTATCAAAGCCA
TTCCCGCAATTTTCCATTCTTTA

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACAGCAATCCTCCTGCCTTGGCTACCC
AAATGCTGCGATTACAGATATGTGTCATCACATCCAGCTACGAGTCTTCC
TTTCTAAAGGTTCTATGTCATGTAAAACTTTGATCAGGAAAATGTACGAC
TTTTTCCTGTTATAGAGGATGGCTAGCTGGGAACAGCATTACACCTTGAG
CTCCATGACAGGAAGGTCCCACACTCCCTTGGGCACCAATCCTCCAGATT
GCTTAAGCCTTGATCTTAAGTAAAAGGTGCATAGCACTCTAGAATTGGTT
TTTCAAACTCCTTTCACACCCATGGAGAAGCCTAATAAACCTAAACGTCA
GTAAAGAACGAAAGGCCTGTTCTCATGGGAAGAAAGGGCATCAAAATAAA
CAACAGCCACAGACAGGTAAGAGCAAAACTCCACTAAGATAGTGTACAGT
TAGTTTCCCATTTGATAACCAGTGTGTGTTTTCAATCCCAGAAAGACTGA
AACAGAAGAGACTCAGCCTTCTGGGATGCGAGCAAGTTCTGCCAGCTCTC
ATTTTTCCCATTCTGGCTTCCCACTTTGGTTCCCCAACTCTAAAGTTCAC
TTGGAGCAGATATGAACTTCCCCCCAAATCAGCTGCCATCTTACTGTTTC
TTTGGGGTCCATTGTTATCAGGAAATTAAAGTCTTTATTTGTAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no381_n03.b1 MSMg01no381_n03.b1 CHROMAT_FILE:
MSMg01no381_n03.b1 PHD_FILE: MSMg01no381_n03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:21 2005
         (512 letters)



>mm_chr3_37423883_37424794
          Length = 912

 Score =  975 bits (504), Expect = 0.0
 Identities = 507/508 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttgcttatttttatttccaggttgtatttgagtcttctgatatattttcaagt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgcttatttttatttccaggttgtatttgagtcttctgatatattttcaagt 264

                                                                       
Query: 65  aagggagcttttactgttcattatacagtagcaaccaagtttttaaaatactaaacttat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagggagcttttactgttcattatacagtagcaaccaagtttttaaaatactaaacttat 324

                                                                       
Query: 125 gctgtgtaggcttggtaaaaaatccttttataggattttatttatttatctaacttttag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gctgtgtaggcttggtaaaaaatccttttataggattttatttatttatctaacttttag 384

                                                                       
Query: 185 aatttacatataaacatgatcttcaggggttttttaaacttaactttttactttacatgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aatttacatataaacatgatcttcaggggttttttaaacttaactttttactttacatgt 444

                                                                       
Query: 245 tatatatactatactctctttcttccttactgctctattagaatcttcagtacaagaaat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tatatatactatactctctttcttccttactgctctattagaatcttcagtacaagaaat 504

                                                                       
Query: 305 gataggtagcagtcaatatttcaatgttaaatacatctctagctgcaggtactcagtaag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gataggtagcagtcaatatttcaatgttaaatacatctctagctgcaggtactcagtaag 564

                                                                       
Query: 365 taaataccttttctcatgttgaaggaaatcccctctattctcagtttgatgagtttagtg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 taaataccttttctcatgttgaaggaaatcccctctattctcagtttgatgagtttagtg 624

                                                                       
Query: 425 tcatcagtagctcttgatttgattgccaagcgcttttttttctgcatatatcaaaatggt 484
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 625 tcatcagtagctcttgatttgattgccaagtgcttttttttctgcatatatcaaaatggt 684

                                       
Query: 485 catagtttttctactttttaaataagta 512
           ||||||||||||||||||||||||||||
Sbjct: 685 catagtttttctactttttaaataagta 712


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space:   452804
Effective search space used:   452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no381_n03.g1 MSMg01no381_n03.g1 CHROMAT_FILE:
MSMg01no381_n03.g1 PHD_FILE: MSMg01no381_n03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:21 2005
         (552 letters)



>mm_chr3_37599259_37600210
          Length = 952

 Score = 1067 bits (552), Expect = 0.0
 Identities = 552/552 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagcaatcctcctgccttggctacccaaatgctgcgattacagatatgtgtcatcacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 acagcaatcctcctgccttggctacccaaatgctgcgattacagatatgtgtcatcacat 759

                                                                       
Query: 61  ccagctacgagtcttcctttctaaaggttctatgtcatgtaaaactttgatcaggaaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 ccagctacgagtcttcctttctaaaggttctatgtcatgtaaaactttgatcaggaaaat 699

                                                                       
Query: 121 gtacgactttttcctgttatagaggatggctagctgggaacagcattacaccttgagctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 gtacgactttttcctgttatagaggatggctagctgggaacagcattacaccttgagctc 639

                                                                       
Query: 181 catgacaggaaggtcccacactcccttgggcaccaatcctccagattgcttaagccttga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 catgacaggaaggtcccacactcccttgggcaccaatcctccagattgcttaagccttga 579

                                                                       
Query: 241 tcttaagtaaaaggtgcatagcactctagaattggtttttcaaactcctttcacacccat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 tcttaagtaaaaggtgcatagcactctagaattggtttttcaaactcctttcacacccat 519

                                                                       
Query: 301 ggagaagcctaataaacctaaacgtcagtaaagaacgaaaggcctgttctcatgggaaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ggagaagcctaataaacctaaacgtcagtaaagaacgaaaggcctgttctcatgggaaga 459

                                                                       
Query: 361 aagggcatcaaaataaacaacagccacagacaggtaagagcaaaactccactaagatagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 aagggcatcaaaataaacaacagccacagacaggtaagagcaaaactccactaagatagt 399

                                                                       
Query: 421 gtacagttagtttcccatttgataaccagtgtgtgttttcaatcccagaaagactgaaac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gtacagttagtttcccatttgataaccagtgtgtgttttcaatcccagaaagactgaaac 339

                                                                       
Query: 481 agaagagactcagccttctgggatgcgagcaagttctgccagctctcatttttcccattc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 agaagagactcagccttctgggatgcgagcaagttctgccagctctcatttttcccattc 279

                       
Query: 541 tggcttcccact 552
           ||||||||||||
Sbjct: 278 tggcttcccact 267


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space:   510564
Effective search space used:   510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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