BAC Information

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BAC

Clone NameMSMg01-382H14
Chromosome3 (Build37)
Map Location 93,884,264 - 93,884,614
singlet/doubletsinglet
Overlap genenone
Upstream geneCrnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761
Downstream geneLOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382H14.T7 (MSMg01no382_h14.b1)MSMg01-382H14.TJ (MSMg01no382_h14.g1)
ACCAG486369AG486370
length756759
length of high quality
(start - end)		563 (30 - 592)505 (60 - 564)
definitionCHROMAT_FILE: MSMg01no382_h14.b1 PHD_FILE: MSMg01no382_h14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:13 2005CHROMAT_FILE: MSMg01no382_h14.g1 PHD_FILE: MSMg01no382_h14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:13 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CCGCTATACGACTCACTATTTTCAGAGGATCCGCGGAATTCATGGCCACC
TACCAGCAGGCAGCAATCTGTGAAGAGGGAATTCTCCCATAGCTCCCCTA
GATCATCTGTCAACATGTGCCTTGGGTCCTTGATTGCAGGTGTCCTCTTC
TGTCCAGGCATGTCAAATACAGTTCCAACTATGCTCACCTTGCAGCATAT
GGTGAACTGGTCTTCAGGGAGAAACCAATTCTGATGGGAGAGGAGAAGAC
CTCGAAGGAGAAACTTTTTGAATCCCCTGTGTTCGTATTGCAGAAAGCAT
TGGACATTGGAGATCTTCCTACTTTGATATTTCTCTCCTTGGGAATTTAT
GATCCAGAACTCGAACTTTGCCAGAATTGGGCTCTCCAGAGCGCTGAGCA
ACTCCAGATAAACTGACAGGTAATCTTTGCTTTCTTCATCAACCCCATTT
GGGTACAACCTCAAACACCATGCCACTTCCTTACTGGCCTCTAATGAGAA
CACTGGGCTGGTAATACTTTTCTGATGTGCCCCCATGCAAAATGAAAAGT
TGCTAATGGTCCAATTATAGCAGAATTTCTGGACATTGATCTGTGTGTAA
CCCCAGCTCTTGAATTCCATGTCCCCTGCCATTTCTGCTGGCGATAGTTT
GGAGGTTAAAAGTGGTCTGAGAAGAGAACTAGAAATTATTTATTCTTCCC
CCTGTTGGATACATTTTAGGTTTACTTTATAATTTATAATTAATTTTTTT
TTAATT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCCCTGGAACAGGTTTCTTCACTAGGCCCAAAGAAACAGCAT
AATCAGGCATTTACTAAGAACCCCTGGTGGTGGGCTTATCAATAGAATAG
CATTACACCTGGCTCCCTTCTTAGTGGTAGCAGCCTGGTCCCTGCCTACT
TTTGATGTATACATTCCTTTTGTATTGTGTCACTGTCACTCAACAGATGT
ATCTCCCTTGGTTTCTTGTTGCTCTTCTGTATAAAAAGTTTGATGCTTGA
CTTGAAAAATTACACTCTGATACTACACAATCTCTCCTGTCGCTTCTGTC
TGTTATTCACCGACTCCTCCACCTGCAACTAGAGACTCATTCTACACAGA
CAGGGACCAAAAACTTAATAAAGTCTTAGAAAGAGGTGGCAAAAGGTCAA
GAGACAAAACAACAGGAGATTGTCCCCTTAGCCTTATGTAACTTAGTTTG
AGTTGGAATTAATTCAGTATTTCAACCAAAACCTGAGGTTTAGGCCCAAA
TAAAGGTTCTTTAANATATTCTCCATACTTAACGAATTCTTGNAAAACTA
AAAAGATCCTTTTATTTTTCTTTAATATAAGTAACTAGAAAAGGACAGTG
GCCAGATAAAAAAGCTAAATTAGATTAAAAATTATAAGCCAGGGCCAGCA
TGATGACCTTTTATTCCCGCACTCCGGAGGGCGAAGAAGGAAATCTTCTG
ATTTTGAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_h14.g1 MSMg01no382_h14.g1 CHROMAT_FILE:
MSMg01no382_h14.g1 PHD_FILE: MSMg01no382_h14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:13 2005
         (505 letters)



>mm_chr3_93883710_93884614
          Length = 905

 Score =  656 bits (339), Expect = 0.0
 Identities = 348/351 (99%)
 Strand = Plus / Minus

                                                                       
Query: 155 ttccttttgtattgtgtcactgtcactcaacagatgtatctcccttggtttcttgttgct 214
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 ttccttttgtattgtgtcactgtcactcaacagatgtatctcccttggtttcttgttgct 846

                                                                       
Query: 215 cttctgtataaaaagtttgatgcttgacttgaaaaattacactctgatactacacaatct 274
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 845 cttctgtataaaaagtttgatgcttgacttgaaaaattacactctgatactatacaatct 786

                                                                       
Query: 275 ctcctgtcgcttctgtctgttattcaccgactcctccacctgcaactagagactcattct 334
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 ctcctgtagcttctgtctgttattcaccgactcctccacctgcaactagagactcattct 726

                                                                       
Query: 335 acacagacagggaccaaaaacttaataaagtcttagaaagaggtggcaaaaggtcaagag 394
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 acacagacagggaccaaaaacttaataaagtcttagaaagaggtggcaaaaggtcaagag 666

                                                                       
Query: 395 acaaaacaacaggagattgtccccttagccttatgtaacttagtttgagttggaattaat 454
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 acaaaacaacaggagattgtccccttagccttatgtaacttagtttgagttggaattaat 606

                                                              
Query: 455 tcagtatttcaaccaaaacctgaggtttaggcccaaataaaggttctttaa 505
           |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 605 tcagtatttcaaccaaaacctgaggtttaggcccaaataagggttctttaa 555


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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