Query= MSMg01no382_l20.b1 MSMg01no382_l20.b1 CHROMAT_FILE:
MSMg01no382_l20.b1 PHD_FILE: MSMg01no382_l20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:34 2005
(455 letters)
>mm_chr3_135670887_135671740
Length = 854
Score = 826 bits (427), Expect = 0.0
Identities = 446/453 (98%), Gaps = 3/453 (0%)
Strand = Plus / Plus
Query: 4 ggaattctgccagattttcgttccgactaccatttgtctctgctttaagcatttatgttg 63
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgccagatttttgttccgactaccatttgtctctgctttaagcatttatgttg 263
Query: 64 caaattcttcatcaatctcctaaaaggctgtgtcaggaaggcaaaaattgttattcttat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 caaattcttcatcaatctcctaaaaggctgtgtcaggaaggcaaaaattgttattcttat 323
Query: 124 tttatggatggggaaaattaaaggagagggaaaaaaaaa-cttgctgtggatgtgttagc 182
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 324 tttatggatggggaaaattaaaggagagggaaaaaaaaaacttgctgtggatgtgttagc 383
Query: 183 aagttatcagggctgaagctttccagtgtgttcctaagcttatttaattttcctgtagta 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aagttatcagggctgaagctttccagtgtgttcctaagcttatttaattttcctgtagta 443
Query: 243 gcgtgttgtctctattgaaaagaaaaacatcagatcccaagaggcacagattaatgtatg 302
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtgtgttgtctctattgaaaagaaaaacatcagatcccaagaggcacagattaatgtatg 503
Query: 303 ggttaccatgtttctggcatatatcaccccaaatcagcaaatctgtttgcatgttttatt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggttaccatgtttctggcatatatcaccccaaatcagcaaatctgtttgcatgttttatt 563
Query: 363 tttttttaagttgttgtctctttggaggttatacttttgcatgcacatgtgagtgtgtgt 422
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttttt--aagttgttgtctctttggaggttatacttttgcatgcacatgtgagtgtgtgt 621
Query: 423 atgtatgttcatgtgagtctatatggagagcag 455
|||||||| ||||||||| ||||||||||||||
Sbjct: 622 atgtatgtgcatgtgagtatatatggagagcag 654
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 854
Length adjustment: 10
Effective length of query: 445
Effective length of database: 844
Effective search space: 375580
Effective search space used: 375580
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no382_l20.g1 MSMg01no382_l20.g1 CHROMAT_FILE:
MSMg01no382_l20.g1 PHD_FILE: MSMg01no382_l20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:34 2005
(419 letters)
>mm_chr3_135864386_135865204
Length = 819
Score = 354 bits (183), Expect = e-102
Identities = 285/355 (80%), Gaps = 61/355 (17%)
Strand = Plus / Minus
Query: 9 aaaagaaaccacaaatgatcattgaagcagtgagtatcagtagtagagggttagagaata 68
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 317 aaaagaaaccacaaatgatcattgaagcagtgagtatcagtaatagagggttagagaata 258
Query: 69 gagctcatgaaataaacacaatgatttttatcatttaaaagagaggtagggctaggcatg 128
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 257 gagctcatgaaataaacacaatgatttttatcatttaaaagagaggtagagccaggcatg 198
Query: 129 gttgctcacacctttaatcccagtacttgg-----gaggcagaagcag--------gt-- 173
|||||||| |||| || ||||||||| || ||||||| |||| ||
Sbjct: 197 attgctcacgccttaaa-cccagtactcggaggtagaggcag--gcagatttctgagttc 141
Query: 174 --gg------atttctgagttcaaggccagcctggtctacaaagtgagtttcaggacagc 225
|| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 140 aaggccagagatttctgagttcaaggccagcctggtctacaaagtgagttccaggacagc 81
Query: 226 cagggctatacagagaaaccctgtctcaaaaaagcaaaccaaaccaaaccaaaccaaacc 285
|||||||| ||||||||||||||||||||||||
Sbjct: 80 cagggctacacagagaaaccctgtctcaaaaaa--------------------------- 48
Query: 286 aaaccaaaccagagagagagagagagagagagagagagagagagagagagagaga 340
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47 --------ccagagagagagagagagagagagagagagagagagagagagagaga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 26
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space: 332100
Effective search space used: 332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
