BAC Information

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BAC

Clone NameMSMg01-383H01
Chromosome3 (Build37)
Map Location 95,411,776 - 95,412,250
singlet/doubletsinglet
Overlap geneGolph3l
Upstream geneTuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1
Downstream geneEG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-383H01.T7 (MSMg01no383_h01.b1)MSMg01-383H01.TJ (MSMg01no383_h01.g1)
ACCAG487109AG487110
length768764
length of high quality
(start - end)		461 (37 - 497)562 (67 - 628)
definitionCHROMAT_FILE: MSMg01no383_h01.b1 PHD_FILE: MSMg01no383_h01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:30 2005CHROMAT_FILE: MSMg01no383_h01.g1 PHD_FILE: MSMg01no383_h01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTA
CTCGTTTCAGAACATTCTTTGTTCTCTTCCCCCTCTCCTAGGGCTACACA
TCTTTCTGGAATGACTGTATATCATCTGGACTGCGAGGAGGCATTCTGAT
AGAGCTGGCCATGCGGGGTCGAATCTATCTGGAACCTCCTACCATGCGTA
AGAAGCGACTCCTGGACAGAAAGGTACAATATCCTCTGAATTATAGAAGT
CAAATACCAACGGTACATTTTGAGAAAATAAGAACATTTGAGGGCAGAAA
AGATAGTTCAGCAGTTAAAACCATTAGTAGTTCTTGCAGAGAATCCAGAT
TTGGTTCCCAGTGCCCACATGGTGGTTAACAGCTGTCTATAACTCCAGTC
CCAGGGTTCTGAATCTCTTTGCACACATGTGATGCACAGAGTACATACAT
ACAAGCAAAACACTCACGTACATAAAAGAAAATTAAGAGTGCTAGACAAG
GTAACACTGGTTCAGCTGTCCCATCCTCTACTTGGTTTAATTATCTTATA
TAGAGTCATAGAAGTTCAAGGCCGGCCTGGCCTACACGGCGAGTTCCAGG
GGAGCCCGGCCACACAGCGAGACTCTGTCTCGGGGGAGTGCGAGGGAACT
CCTACAAACCTTGGGCCTGGTGTCGTCCGGCCTTACCAACGATAGTTTTC
CGCCCTTGAAATGGCCCGTGCGGAACCCTTTCCCCCGGGACGTTGGACAA
ACCCCCATTTTTTATCGC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAGATGGAACAGTAGGCTCCAGTGGGATTCCAGAC
TGGGTTCACTTTAAATTCACAGCTGAGGTAGGACTTGCTGAATACTGGAG
ACAATGAGCCATTGCATTAGTCACTTTATTCTTTTTTTTTTAACAAAAAT
TTATTACAATGTACAACAGGCTCCAAGATAACACTCCATTCTAGCTATTA
GTGTATTAGTGGCAAAGATGTTATGGCAGGGAATCCAGATGTTTAAATAG
GAATGGAAGAGGAGGGTCACCATCACCCCAGATGTGAGGAATAGCTTACT
TTTTGCCACATTTCTTAATTCCACCTGTGGCCAGGGGGCCCTTCCCTGCG
GCCTTGGCTTTTAGCTGCTCTAGTTTCTTCTGCTCCTCCTTTTGTTTCTG
CCTGAAAGCCTTATCTTCCTCGTCCATCTCCTTGGCCTGTTCTTGGGCTT
AAACCAAAACTAATTGCACCTTATTAGAATAATTTCAAGGGCTTCTTTTT
GCCACCTTCCTGGCCTGACATGATGCCTCCAGCCCCTTCCTTCTAATCGT
GATATAAATACTTTCTTCATTATTTCAGATAAAACANGTGGAAAGAAGTT
CTCCAAAGAATTTGAAGAAACAAGTTCCAAGCTAGAGGAGTTTGTGAATG
GATTAAATTAACCAGTTGAAAAATGGTGCCTCCCTAACAAATGCATTAAA
GAAACGTTGAAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no383_h01.b1 MSMg01no383_h01.b1 CHROMAT_FILE:
MSMg01no383_h01.b1 PHD_FILE: MSMg01no383_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:30 2005
         (461 letters)



>mm_chr3_95411573_95412433
          Length = 861

 Score =  795 bits (411), Expect = 0.0
 Identities = 451/475 (94%), Gaps = 17/475 (3%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagtactcgtttcagaacattctttgttctcttccccctctcctagggctacac 63
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 204 ggaattcagtactcgtttcagaacattctttgttttcttccccctctcctagggctacac 263

                                                                       
Query: 64  atctttctggaatgactgtatatcatctggactgcgaggaggcattctgatagagctggc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atctttctggaatgactgtatatcatctggactgcgaggaggcattctgatagagctggc 323

                                                                       
Query: 124 catgcggggtcgaatctatctggaacctcctaccatgcgtaagaagcgactcctggacag 183
           |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 324 catgcggggtcgaatctatctggaacctcccaccatgcgtaagaagcgactcctagacag 383

                                                                       
Query: 184 aaaggtacaatatcctctgaattatagaagtcaaataccaacggtacattttgagaaaat 243
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 384 aaaggtacaatatcctctgaattatagaagtcaaataccaatggtacattttgagaaaat 443

                                                                       
Query: 244 aagaacatttgagggcagaaaagatagttcagcagttaaaaccattagtagttcttgcag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 444 aagaacatttgagggcagaaaagatagttcagcagttaaaaccattagttgttcttgcag 503

                                                                       
Query: 304 agaatccagatttggttcccagtgcccacatggtggttaacagctgtctataactccagt 363
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aggatccagatttggttcccagtgcccacatggtggttaacagctgtctataactccagt 563

                                                                       
Query: 364 cccagggttctgaatctctt-----------------tgcacacatgtgatgcacagagt 406
           ||||||||||||||||||||                 |||||||||||||||||||||||
Sbjct: 564 cccagggttctgaatctcttctggcttcctcaggcattgcacacatgtgatgcacagagt 623

                                                                  
Query: 407 acatacatacaagcaaaacactcacgtacataaaagaaaattaagagtgctagac 461
           |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 acatacgtacaagcaaaacactcacgtacataaaagaaaattaagagtgctagac 678


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space:   383801
Effective search space used:   383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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