Query= MSMg01no383_i05.b1 MSMg01no383_i05.b1 CHROMAT_FILE:
MSMg01no383_i05.b1 PHD_FILE: MSMg01no383_i05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:34 2005
(565 letters)
>mm_chr3_3220016_3220977
Length = 962
Score = 690 bits (357), Expect = 0.0
Identities = 512/569 (89%), Gaps = 19/569 (3%)
Strand = Plus / Plus
Query: 5 gaattcagggccctgtgtgatgatgtcacaaccctgaatttcctccacacttagtttcta 64
||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 205 gaattcagggccctgggtgatgatgtcacaaacctgaatttcctcgacacttagtttcta 264
Query: 65 tgactttttctggagagaagtgtcctggcccgtacagtacaaagtcgaacaattctctga 124
|||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||
Sbjct: 265 tgactttttctggagagaagtgtcctggcccggccagtacaaagttgaacaatactctga 324
Query: 125 gtagggagtaaggctgattctaga-aacga-tagaaaaatatgcaagaaacagataatgg 182
|||||||||| ||||||||||||| || || | |||||||||||||| |||||||| ||
Sbjct: 325 gtagggagtagggctgattctagagaa-gact-gaaaaatatgcaagcaacagatactgt 382
Query: 183 aagctctacaggtcattaccacagcagcagtaagtgtatttctcatggcatttttatact 242
||| ||| || ||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 383 aaggtctgcaagtcattaccacagcagcagtaagtgtatttctcatggcatttttaaatt 442
Query: 243 acatttctgtggaaatcaaagccacatgctaacagaaacaatttttgaaatcagatatct 302
||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 443 acagttctgtggaaggcaaagccacaggctaacagaaacaatttttgaaatcagatatct 502
Query: 303 gttcccatgcaaaatcctccctgttccttccaccaaggccaatagaatcattatcccctt 362
|||||| ||||||| ||||||||||| ||| |||||| ||||||||||||||||||||||
Sbjct: 503 gttcccttgcaaaaccctccctgttctttctaccaagtccaatagaatcattatcccctt 562
Query: 363 gccttaagccttaa-atgcacctccttttattgttccatgcctcagatgt-cctggaaag 420
||||| ||||| || ||||||| ||| ||||||||||||||||||||| | ||| ||||
Sbjct: 563 gccttgagcct-aacatgcaccgcctcttattgttccatgcctcagat-tgcctagaaat 620
Query: 421 ctgccaacagaccctcacttacctgacactgcatggcaggcagacttttctctctc---- 476
||||||||||||||| ||||||||||| |||| ||||||||||||||||||||| |
Sbjct: 621 ctgccaacagaccctaacttacctgactctgcctggcaggcagacttttctctcccccac 680
Query: 477 tcttttttcccccctatgcttcagagaattggcaaatggctcctgacagagaaataaaca 536
|| |||||| ||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct: 681 tc------cccccc-atgcttcagagaagtggcaaatggctcctgacagagaaataagca 733
Query: 537 gatatgacatcagcaatggatggaatgat 565
|||| ||||||||||||||| ||||||||
Sbjct: 734 gataggacatcagcaatggaaggaatgat 762
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 962
Length adjustment: 10
Effective length of query: 555
Effective length of database: 952
Effective search space: 528360
Effective search space used: 528360
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no383_i05.g1 MSMg01no383_i05.g1 CHROMAT_FILE:
MSMg01no383_i05.g1 PHD_FILE: MSMg01no383_i05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:35 2005
(180 letters)
>mm_chr1_90127948_90128526
Length = 579
Score = 329 bits (170), Expect = 7e-95
Identities = 176/178 (98%), Gaps = 1/178 (0%)
Strand = Plus / Plus
Query: 1 cagttctaggaagacaattctgaacactgtgtagatggaggagggctggggcaggtttag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagttctaggaagacaattctgaacactgtgtagatggaggagggctggggcaggtttag 260
Query: 61 taggtagtacacagctgggaatggatcctggttgatggggcttgctggggctcttagtga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taggtagtacacagctgggaatggatcctggttgatggggcttgctggggctcttagtga 320
Query: 121 aggagagaattaattcatcattagaaacgcactgtgagtctaganatctgaggaaatg 178
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 aggagagaattagttcatcattagaaacgcactgtgagtctaga-atctgaggaaatg 377
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 180
Length of database: 579
Length adjustment: 8
Effective length of query: 172
Effective length of database: 571
Effective search space: 98212
Effective search space used: 98212
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
