Query= MSMg01no384_b05.b1 MSMg01no384_b05.b1 CHROMAT_FILE:
MSMg01no384_b05.b1 PHD_FILE: MSMg01no384_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:17 2005
(519 letters)
>mm_chr3_42833209_42834127
Length = 919
Score = 861 bits (445), Expect = 0.0
Identities = 487/515 (94%), Gaps = 22/515 (4%)
Strand = Plus / Minus
Query: 5 gaattctctataagaatagctagttctattagtggctatattttgttataataattccag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gaattctctataagaatagctagttctattagtggctatattttgttataataattccag 504
Query: 65 aggtatactgacagtagcatgatgatggttttatttactggaaacttactgaacaccgaa 124
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 503 aggtatactgacagtagcatgatgatggttttatttactggcaacttactgaacaccgaa 444
Query: 125 tctttgcatttcttatgtcatatcatcttgagaacactgccactactatgtatagtatca 184
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 443 tctttgcatttcttatgtcatatcatcttgagaacactgccattagtatgtatagtatca 384
Query: 185 ccataaccaaaaaggattcagtatcttaacattggtataaaacagtttaatgtgagtctc 244
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 383 ccataaccaaaaaggattcagtatcttaacattggtataaaacagtttagtgtgagtctc 324
Query: 245 ccaggtctgcctctgcaaaataagtccatccctggactctagaaaaggttcatggaacat 304
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 323 ccaggtctgcctctgcaaaataagtccattcctggactctagaaaaggttcatggaacat 264
Query: 305 atcaaattacctggacctctctataagtcaaggcctcttttcctttaattgttatcgtta 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 atcaaattacctggacctctctataagtcaaggcctcttttcctttaattgttatcgtta 204
Query: 365 cacacacacacacacacacacacacacacacacacacacacacacacacacacacacaca 424
|||||||||||| |||||||||||||||||||||||||||
Sbjct: 203 cacacacacacatacacacacacacacacacacacacaca-------------------- 164
Query: 425 caaatgtataaatacaacctgctaagtccatttcatttacttacatttgtgtgatttcag 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 --aatgtataaatacaacctgctaagtccatttcatttacttacatttgtgtgatttcag 106
Query: 485 ggttgatttcatattaaagtagaaatcataccaag 519
|||||||||||||||||||||||||||||||||||
Sbjct: 105 ggttgatttcatattaaagtagaaatcataccaag 71
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space: 462681
Effective search space used: 462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no384_b05.g1 MSMg01no384_b05.g1 CHROMAT_FILE:
MSMg01no384_b05.g1 PHD_FILE: MSMg01no384_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:17 2005
(467 letters)
>mm_chr3_42675903_42676769
Length = 867
Score = 830 bits (429), Expect = 0.0
Identities = 459/471 (97%), Gaps = 4/471 (0%)
Strand = Plus / Plus
Query: 1 aaactaa----ttttttacttgtcttaggttccatgttaatactctctttggaatgcaca 56
||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 197 aaactaattttttttttacttgtcttaggttccatattaatactctctttggaatgcaca 256
Query: 57 aaagggagttccaacactggtacgaatagggggtgggagaaaatcacccatattcagcag 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aaagggagttccaacactggtacgaatagggggtgggagaaaatcacccatattcagcag 316
Query: 117 aatagtattttaggatgtaggacttgggaaaactttgagtccactggaaattgtgtgggg 176
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 317 aatagtattttaggatgtaggatttgggaaaactttgagtccactggaaattgcgtgggg 376
Query: 177 atggaaaatggcaataagtgcatataattaaccaagctggaatgagctgggaaaatcggg 236
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 atggaaaatggaaataagtgcatataattaaccaagctggaatgagctgggaaaatcggg 436
Query: 237 gccaagtgctcttttaattattcagttaatggacctattcatgcccaaacagagagtggc 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gccaagtgctcttttaattattcagttaatggacctattcatgcccaaacagagagtggc 496
Query: 297 actgaagctggtggtctgttttgcagaaatatgtccttatttctgcactctaaatccaaa 356
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 497 actgaagctggtggtctgttttgcagaaatatgtacttatttctgcactctaaatccaaa 556
Query: 357 tggaagataactgttaacctaagaacttctaattatgtcctagtgttccaatttcccctg 416
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 557 tggaagataactgttaacctaagagcttctaattatgtcctcgtgttccaatttcccctg 616
Query: 417 tgaagttagttcaccttcagaatatccctgggattcagggatgggtagaac 467
||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 617 tgaagttagttcaccttcagattatccctgggattcagggatgggtagaac 667
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space: 391649
Effective search space used: 391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
