BAC Information

Click to search

BAC

Clone NameMSMg01-384B18
Chromosome3 (Build37)
Map Location 47,802,432 - 47,966,468
singlet/doubletdoublet
Overlap geneLOC666202
Upstream geneLOC545517, LOC383849, LOC383850, LOC100039426
Downstream geneLOC666208, 1700018B24Rik, LOC100039404, EG666230
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384B18.T7 (MSMg01no384_b18.b1)MSMg01-384B18.TJ (MSMg01no384_b18.g1)
ACCAG487623AG487624
length758760
length of high quality
(start - end)		553 (33 - 585)418 (64 - 481)
definitionCHROMAT_FILE: MSMg01no384_b18.b1 PHD_FILE: MSMg01no384_b18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:19 2005CHROMAT_FILE: MSMg01no384_b18.g1 PHD_FILE: MSMg01no384_b18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,802,432 - 47,802,980)(47,966,051 - 47,966,468)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGTATAC
ATGAATAATTTTTCCATCAGCTTCCCAGGAGGTCAGTGCTACTGGATTTC
ATGTGGGAATTCTCTGCTGCTCTTTATCCCTAGTAAATCCTTGAAGAAAC
TATTCATATTTTAAAAGGTTTGAATGATAGATAATCTAGACACACCTGTA
GATAATTTAATTTATAACAAATATTATTACAAAAATTTTTGTGACCCCAA
AAACTCCACTAGGAAACTTCTATATCTGATAAAAAAACTTCAGCAAAGTA
GCTGGATATAAAATTAAATCAAACAAATCAGTGACTTTCCTCTACACAAA
GGATAAAAAGGCTGGGAAAGAAATTAAGAAAATAACAACATTGAGAATAG
TCACAAATGATATAAAATAATAGGAGTAGATGAGAATGAAGATTTTCAAG
TCAAAGGGCCAGCAAATATATTCAACAAAATTATAGAAGAAAACTTCCCA
AACCTAAAAAAAGAGATGCCCATGAACATACAAGAAGCCTACAGAACTCC
AAATACACTGGACCAGAAAAGAAATTCCTCCTGACACATAATGATCAGAA
CAACAAATGCNCTAAATAAAGATAGAATATTTAAAGCAGTAAGGGAAAAG
GTCAAGTAACATATAAAGGGCAGCCTACCCAAATACACCCCATTTTTCCC
CAGAGACTAATGAAGCCCAAGAGCCTGTACCGATGTTTTTCGAACCCTAT
AAGAACCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTAAAGCAACATATAGGCAAAACACACATAAACATAAA
GTCAAAAAGAATATGTATATTTGTCTGTCCATATATACTTATACCTTTTG
CTTTTAAATTGTGAGAGCAGTGTCGATAATAACAGCTAAAAAAGAAATGT
AGTTATTTGCATTTATTTATATGTTTCTATATAAAATAGTCACAAAAAAA
ATCGTCCATAATATTAAGGTTGTCATGAAATCCTGTAGAATGGCACCTCT
TAAATTAATTGATTTATATTTGAAGCAATATTATATGGGTATCAATGAAA
AAATTTAACTATACTTTGGTTACTTTCAATACTTTGCATCTGTTAGAAAT
AAAGTTAGATATAGAGAAAAACATACAAATTTTAAGCATCATTTTTTCTA
GTAATTGCATGTAAATCATCAATTGATTGAGTTAACTTCAATCCAGGGCA
TGGGGGCAAAAGCACATTCCTAGAATCCTTGACAGGTTTAAGTATAAATG
TGTGAATATCCTTTCCTTAGCTACTCCAGGTTGTGACCGTTTGTTTCTTT
GGCCCGTGATTTTGTAATCTATTTACTTTTTCTGCCCAGCATTCTCTATT
TGTTACACCTGCTCCCTCTTTATCATCTTTTGACCTTACCTTTTTTTCTC
ACCTCCCTATTACTTTTTCTTCTTTTCCCGTCGCTTTCCTTCTTTTTCTT
TCTCCCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_b18.b1 MSMg01no384_b18.b1 CHROMAT_FILE:
MSMg01no384_b18.b1 PHD_FILE: MSMg01no384_b18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:19 2005
         (553 letters)



>mm_chr3_47802228_47803180
          Length = 953

 Score = 1062 bits (549), Expect = 0.0
 Identities = 549/549 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagtatacatgaataatttttccatcagcttcccaggaggtcagtgctactgga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagtatacatgaataatttttccatcagcttcccaggaggtcagtgctactgga 264

                                                                       
Query: 65  tttcatgtgggaattctctgctgctctttatccctagtaaatccttgaagaaactattca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttcatgtgggaattctctgctgctctttatccctagtaaatccttgaagaaactattca 324

                                                                       
Query: 125 tattttaaaaggtttgaatgatagataatctagacacacctgtagataatttaatttata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tattttaaaaggtttgaatgatagataatctagacacacctgtagataatttaatttata 384

                                                                       
Query: 185 acaaatattattacaaaaatttttgtgaccccaaaaactccactaggaaacttctatatc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acaaatattattacaaaaatttttgtgaccccaaaaactccactaggaaacttctatatc 444

                                                                       
Query: 245 tgataaaaaaacttcagcaaagtagctggatataaaattaaatcaaacaaatcagtgact 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgataaaaaaacttcagcaaagtagctggatataaaattaaatcaaacaaatcagtgact 504

                                                                       
Query: 305 ttcctctacacaaaggataaaaaggctgggaaagaaattaagaaaataacaacattgaga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttcctctacacaaaggataaaaaggctgggaaagaaattaagaaaataacaacattgaga 564

                                                                       
Query: 365 atagtcacaaatgatataaaataataggagtagatgagaatgaagattttcaagtcaaag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atagtcacaaatgatataaaataataggagtagatgagaatgaagattttcaagtcaaag 624

                                                                       
Query: 425 ggccagcaaatatattcaacaaaattatagaagaaaacttcccaaacctaaaaaaagaga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggccagcaaatatattcaacaaaattatagaagaaaacttcccaaacctaaaaaaagaga 684

                                                                       
Query: 485 tgcccatgaacatacaagaagcctacagaactccaaatacactggaccagaaaagaaatt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgcccatgaacatacaagaagcctacagaactccaaatacactggaccagaaaagaaatt 744

                    
Query: 545 cctcctgac 553
           |||||||||
Sbjct: 745 cctcctgac 753


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space:   512049
Effective search space used:   512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no384_b18.g1 MSMg01no384_b18.g1 CHROMAT_FILE:
MSMg01no384_b18.g1 PHD_FILE: MSMg01no384_b18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:20 2005
         (418 letters)



>mm_chr3_47965851_47966668
          Length = 818

 Score =  801 bits (414), Expect = 0.0
 Identities = 417/418 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaagcaacatataggcaaaacacacataaacataaagtcaaaaagaatatgtatatttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 taaagcaacatataggcaaaacacacataaacataaagtcaaaaagaatatgtatatttg 559

                                                                       
Query: 61  tctgtccatatatacttataccttttgcttttaaattgtgagagcagtgtcgataataac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tctgtccatatatacttataccttttgcttttaaattgtgagagcagtgtcgataataac 499

                                                                       
Query: 121 agctaaaaaagaaatgtagttatttgcatttatttatatgtttctatataaaatagtcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 agctaaaaaagaaatgtagttatttgcatttatttatatgtttctatataaaatagtcac 439

                                                                       
Query: 181 aaaaaaaatcgtccataatattaaggttgtcatgaaatcctgtagaatggcacctcttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 aaaaaaaatcgtccataatattaaggttgtcatgaaatcctgtagaatggcacctcttaa 379

                                                                       
Query: 241 attaattgatttatatttgaagcaatattatatgggtatcaatgaaaaaatttaactata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 attaattgatttatatttgaagcaatattatatgggtatcaatgaaaaaatttaactata 319

                                                                       
Query: 301 ctttggttactttcaatactttgcatctgttagaaataaagttagatatagagaaaaaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ctttggttactttcaatactttgcatctgttagaaataaagttagatatagagaaaaaca 259

                                                                     
Query: 361 tacaaattttaagcatcattttttctagtaattgcatgtaaatcatcaattgattgag 418
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tacaaattttaagtatcattttttctagtaattgcatgtaaatcatcaattgattgag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space:   330881
Effective search space used:   330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |