BAC Information

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BAC

Clone NameMSMg01-384E21
Chromosome3 (Build37)
Map Location 159,398,957 - 159,580,485
singlet/doubletdoublet
Overlap geneGpr177
Upstream geneLOC100041008, LOC668905, LOC668907, Depdc1a, Rpe65
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384E21.T7 (MSMg01no384_e21.b1)MSMg01-384E21.TJ (MSMg01no384_e21.g1)
ACCAG487773AG487774
length762770
length of high quality
(start - end)		499 (34 - 532)466 (64 - 529)
definitionCHROMAT_FILE: MSMg01no384_e21.b1 PHD_FILE: MSMg01no384_e21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:34 2005CHROMAT_FILE: MSMg01no384_e21.g1 PHD_FILE: MSMg01no384_e21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(159,398,957 - 159,399,212)(159,580,020 - 159,580,485)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGAACA
GTACTGGGTAGTAATTCATCAATATTTCCCATACTCTTTAGTAAAATTTT
GCAAACTTTTACTTGGAAGTATAGACACCCAAAGTAAAAACCATATTTCA
AACATCTACATGTGCTCCAAGTAATTACATTCTAACCAATGGCATGCATG
TAGACACTGCAACAGGAAGAATGTACAAGCTGCACCTTTTGTTGCCCTGA
TAGGATTGCTGGACCTTATAGCATAATCTCAAACCATCTACTGATAATGG
TATACAGCACTTTAAAGGAACCACGGGCTCTTCATCATGGGCTTTGTGCC
TGCCAACATCAGTCTTTTTATTAAAAATAATTTAAACTGTATACTGTTTA
GGTCATGATTGTTCTGTGATTTCTATTGTAACTAAAATCCATCCTAATTT
ATTCAGTATCTTTGAATATAAGAAGCAGAAAACGTATGTTAAGGCAATTC
AAGCATTTTGGAGACTTTTTTCATAAAAGGAGAAATCTCACAGCTGGTTA
ATTCAAGAGGATCAATGGGGCTATATTTGTACTTCATTCTGCTATGGTCC
TCACTGTTCCCTTACAGTACTCAATCCTTCAGCCCTATGTAAAATTCTGT
CCCTCACATATGCAAGCGCTTTTCATATCTTTTTATTTAAGTTCACTTTG
GGAACCCTCCCTCCCATTTTGATGCTGCCTTAACACCTTGAACTGCCTAA
AAAAAAACCAAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXAAAGACATCATATCCCCTTAGAGTTGAAATCCACCCA
CCTGACTATTGCAGCTAATATAAAAGCAGGCTAGAGCCCAATACTGGAGC
AATGGTAAATTAATCTTTCTCTCCAAAGAAAAGCTGCAAATTCTGTTGTA
AGATAGTTTCCATCACTTTAAAATGTGCAACAGTTAAACATGTACAAGAT
TAAATTCAGCAAGGCATAGTCATCTTAGGAATTAATCCCTTTAGAATTTA
GGTGAAATGATTTTTGCAGAATTAATTCAGTGGGAAAGGCAGTGGCCTGA
AAGTCGGTACTTGAAGACTCCAGTTTTGTAAAAGGGCAGAGGCAGGCCTG
AAGAATGGAAGTGCTCTTCCCGTTCATATCCCAGACAGCATGGTCCATCT
TACTGAAGACTCCACTTCTGAATGGGTGATTCCTGTTCTCAAAATAGGGA
ATTCAGTAGGCTGCTTAAGAACAGCATATTGCTAAGTGGCTGGAGAACCA
CGGAACATAATGGTGACATGAGGAAACTAGCCCAAAGTGGAGTGAAGTCT
ACCCTAACCCCTCTGCTTGAATATGGGGGTATGGGTTAAAGGGGGATCCT
TACTTAAAGAGATGGTCCGTTGAAAAAAAAATTTGCCCCGAAACTGAAGA
ACTGGATTTTTCCCCTGGGGAAGGGAGAAAAGAATTCCCCCCCCCCTGGG
GTCCTAAGGGAAAAAAAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_e21.b1 MSMg01no384_e21.b1 CHROMAT_FILE:
MSMg01no384_e21.b1 PHD_FILE: MSMg01no384_e21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:34 2005
         (499 letters)



>mm_chr3_159398754_159399652
          Length = 899

 Score =  487 bits (252), Expect = e-142
 Identities = 255/256 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccagaacagtactgggtagtaattcatcaatatttcccatactctttagtaaaa 63
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccagaacagtagtgggtagtaattcatcaatatttcccatactctttagtaaaa 263

                                                                       
Query: 64  ttttgcaaacttttacttggaagtatagacacccaaagtaaaaaccatatttcaaacatc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttttgcaaacttttacttggaagtatagacacccaaagtaaaaaccatatttcaaacatc 323

                                                                       
Query: 124 tacatgtgctccaagtaattacattctaaccaatggcatgcatgtagacactgcaacagg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tacatgtgctccaagtaattacattctaaccaatggcatgcatgtagacactgcaacagg 383

                                                                       
Query: 184 aagaatgtacaagctgcaccttttgttgccctgataggattgctggaccttatagcataa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aagaatgtacaagctgcaccttttgttgccctgataggattgctggaccttatagcataa 443

                           
Query: 244 tctcaaaccatctact 259
           ||||||||||||||||
Sbjct: 444 tctcaaaccatctact 459


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space:   434721
Effective search space used:   434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no384_e21.g1 MSMg01no384_e21.g1 CHROMAT_FILE:
MSMg01no384_e21.g1 PHD_FILE: MSMg01no384_e21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:34 2005
         (466 letters)



>mm_chr3_159579820_159580685
          Length = 866

 Score =  886 bits (458), Expect = 0.0
 Identities = 464/466 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagacatcatatccccttagagttgaaatccacccacctgactattgcagctaatataa 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 666 aaagacatcatatccccttagagttgaaatccacccaccagactattgcagctaatataa 607

                                                                       
Query: 61  aagcaggctagagcccaatactggagcaatggtaaattaatctttctctccaaagaaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 aagcaggctagagcccaatactggagcaatggtaaattaatctttctctccaaagaaaag 547

                                                                       
Query: 121 ctgcaaattctgttgtaagatagtttccatcactttaaaatgtgcaacagttaaacatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ctgcaaattctgttgtaagatagtttccatcactttaaaatgtgcaacagttaaacatgt 487

                                                                       
Query: 181 acaagattaaattcagcaaggcatagtcatcttaggaattaatccctttagaatttaggt 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 486 acaagattaaattcagcaaggcacagtcatcttaggaattaatccctttagaatttaggt 427

                                                                       
Query: 241 gaaatgatttttgcagaattaattcagtgggaaaggcagtggcctgaaagtcggtacttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gaaatgatttttgcagaattaattcagtgggaaaggcagtggcctgaaagtcggtacttg 367

                                                                       
Query: 301 aagactccagttttgtaaaagggcagaggcaggcctgaagaatggaagtgctcttcccgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aagactccagttttgtaaaagggcagaggcaggcctgaagaatggaagtgctcttcccgt 307

                                                                       
Query: 361 tcatatcccagacagcatggtccatcttactgaagactccacttctgaatgggtgattcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tcatatcccagacagcatggtccatcttactgaagactccacttctgaatgggtgattcc 247

                                                         
Query: 421 tgttctcaaaatagggaattcagtaggctgcttaagaacagcatat 466
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tgttctcaaaatagggaattcagtaggctgcttaagaacagcatat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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