Query= MSMg01no384_e23.b1 MSMg01no384_e23.b1 CHROMAT_FILE:
MSMg01no384_e23.b1 PHD_FILE: MSMg01no384_e23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:35 2005
(544 letters)
>mm_chr3_144615373_144616316
Length = 944
Score = 897 bits (464), Expect = 0.0
Identities = 522/542 (96%), Gaps = 7/542 (1%)
Strand = Plus / Plus
Query: 8 ttcatgat-atat--gatatgctttaaaaactcagaaatatc-ttttgattcatgtta-c 62
|||||||| | || ||||||||||||||||||| ||||||| |||| |||||||||| |
Sbjct: 205 ttcatgatgacatgggatatgctttaaaaactcaaaaatatcttttttattcatgttatc 264
Query: 63 ttttcaaaattttgttgtagctgctgatgaggaccttttgttctttaagatacaaatagt 122
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 265 -tttcaaaattttgttatagctgctgatgaggaccttttgttctttaagatacaaattgt 323
Query: 123 gatacctacaataatacaaactagaacaacagcacccaaaacagatagcacaatagtaga 182
| ||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||
Sbjct: 324 ggtacctacaataatacaaactagaacaagagcgcccaaaacagacagcacaatagtagc 383
Query: 183 aacactaactcctgatgaacttggactttcatcagggtcaggctctgcctgaggggtgaa 242
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aacactaactcctgataaacttggactttcatcagggtcaggctctgcctgaggggtgaa 443
Query: 243 cagtgccacttgtgcgatgttggatggtcccgaactcaaactgcttttgtcgacactttc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cagtgccacttgtgcgatgttggatggtcccgaactcaaactgcttttgtcgacactttc 503
Query: 303 aatggcaatgaatatgtacgttgcatttttcttctgtgatattttctggtttaaaggcaa 362
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 504 aatggcaatgaatatgtacgttgcatttt-cttctgtgatattttctggtttaaaggcaa 562
Query: 363 aggtttcctcggagttggcttcttttggtgtaaggttagttgtatcaacccgaggagagt 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aggtttcctcggagttggcttcttttggtgtaaggttagttgtatcaacccgaggagagt 622
Query: 423 tattaaaattgtctctcagttcaatgatgtttttgcttgttcttatgatatactgttgaa 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tattaaaattgtctctcagttcaatgatgtttttgcttgttcttatgatatactgttgaa 682
Query: 483 ctgagaaaaatgttatgtgttggttagttactgcatcacaccatattaaatttctttcta 542
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ctgacaaaaatgttatgtgtgggttagttactgcatcacaccatattaaatttctttcta 742
Query: 543 gt 544
||
Sbjct: 743 gt 744
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space: 498756
Effective search space used: 498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no384_e23.g1 MSMg01no384_e23.g1 CHROMAT_FILE:
MSMg01no384_e23.g1 PHD_FILE: MSMg01no384_e23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:35 2005
(502 letters)
>mm_chr3_144670736_144671641
Length = 906
Score = 835 bits (432), Expect = 0.0
Identities = 483/502 (96%), Gaps = 4/502 (0%)
Strand = Plus / Minus
Query: 5 gtcaagatgattactctgtccatgtgggctgtaggctag----gctccccaagtgaaaaa 60
||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct: 706 gtcaagatgattactctatccatgtgggctgtaggctaggcttgctccccaagtgaaaaa 647
Query: 61 ttctgcccacttttcttgcacttaagaaagctataaggaagtaatgaattctgtatttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 ttctgcccacttttcttgcacttaagaaagctataaggaagtaatgaattctgtatttct 587
Query: 121 tttgtagaaggtgtctgtttactgtgacagaactatctttattggaatgaaatgtataaa 180
| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
Sbjct: 586 tctgtagaaggtgtctgtttactgtgacagaactctctttattggaatgaaacgtataca 527
Query: 181 tgaatttcatgcctaaatattccctggggagaaagtttgaatttttcttccccagtcatg 240
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 526 tgaatttcatgcctaaatattccctggggagaaagtttgaattcttcttccccagtcatg 467
Query: 241 tacatagaacaatctgatttggcttgacaggtaattagtgagtcgatagctcaggatatc 300
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 466 tacatagaacaatctgatttggcttggcaggtaatcagtgagtcgatagctcaggatatc 407
Query: 301 agccatgacagagatgtgtgaaaggacctctgatttcaaaagaaaaggacagttcagggt 360
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 agtcatgacagagatgtgtgaaaggacctctgatttcaaaagaaaaggacagttcagggt 347
Query: 361 gagaagatttacatataagtatgtatatatgtgcacatacattgtaaataagcatcaggc 420
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 346 gagacgatttacatataagtatgtatatatgtgcacatacagtgtaaataagcatcaggc 287
Query: 421 tttattctatacataatcaagcctcatggtctcttgtagctaatgctcattttctctgta 480
||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 286 tttattctacacataatcaagcctcatggtctcttgtagctagtgctcattttctccata 227
Query: 481 aaatgctaactcacatatggat 502
||||||||||||||||||||||
Sbjct: 226 aaatgctaactcacatatggat 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 906
Length adjustment: 10
Effective length of query: 492
Effective length of database: 896
Effective search space: 440832
Effective search space used: 440832
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
