Query= MSMg01no384_h01.b1 MSMg01no384_h01.b1 CHROMAT_FILE:
MSMg01no384_h01.b1 PHD_FILE: MSMg01no384_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:44 2005
(569 letters)
>mm_chr3_34932045_34933013
Length = 969
Score = 820 bits (424), Expect = 0.0
Identities = 427/428 (99%)
Strand = Plus / Minus
Query: 6 gcaagataaacatgctttctgaggagcaataaaaataagtactccactggtgaactatat 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gcaagataaacatgctttctgaggagcaataaaaataagtactccactggtgaactatat 369
Query: 66 acacttgcaagagatgcttatattagttataaatactcccaaaggggaaagagcttgcag 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 acacttgcaagagatgcttatattagttataaatactcccaaaggggaaagagcttgcag 309
Query: 126 aatcattttttgatgagttactatgcagctattagaaagtcatataggagagtattcagc 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 aatcattttttgatgagttactatgcagctattagaaagtcatataggagagtattcagc 249
Query: 186 aagaggggaaaaagcatgatacactgttaatattaaaagtcacacttgcagattgtgtcc 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 248 aagaggggaaaaagcatgatacactgttaatattaaaagtcacacttgcagattgtgccc 189
Query: 246 accaacttaccatcatggaatgggggagggcagtgaggcctcacccctccccgagggatt 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 accaacttaccatcatggaatgggggagggcagtgaggcctcacccctccccgagggatt 129
Query: 306 attggcagtcaatggtggcagacgtaagaggtatgtcaggctcttcagtgatgtagccgc 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 attggcagtcaatggtggcagacgtaagaggtatgtcaggctcttcagtgatgtagccgc 69
Query: 366 tgagagggctgcctatgcaacagaaataactgcacacccattttcgtaaaagcaactcta 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 tgagagggctgcctatgcaacagaaataactgcacacccattttcgtaaaagcaactcta 9
Query: 426 aactcaat 433
||||||||
Sbjct: 8 aactcaat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space: 536081
Effective search space used: 536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no384_h01.g1 MSMg01no384_h01.g1 CHROMAT_FILE:
MSMg01no384_h01.g1 PHD_FILE: MSMg01no384_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:44 2005
(539 letters)
>mm_chr3_34919260_34920199
Length = 940
Score = 890 bits (460), Expect = 0.0
Identities = 526/556 (94%), Gaps = 19/556 (3%)
Strand = Plus / Plus
Query: 1 ctcagcaagtcagctgcattattaagagtcaaaattctgcttaataaaaaa-tatgcctt 59
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 ctcagcaagtcagctgcattattaagagtcaaaattctgcttaataaaaaaatatgcctt 260
Query: 60 ggaagacataactcccgcagttttatcctaacatgtactagtgtggggacagctaactga 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaagacataactcccgcagttttatcctaacatgtactagtgtggggacagctaactga 320
Query: 120 agagccatagccggatagttctgtgttccagctaaacataccaggcttaactggagctga 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagccatagccggatagttctgtgttccagctaaacataccaggcttaactggagctgg 380
Query: 180 tcaactcttggcttgcatcattaccagacatacctggaagatggtgctctctatcacgtt 239
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 tcaactcttggcttgcatcattaccagacatacctagaagatggtgctctctatcacgtt 440
Query: 240 cacatggtcttaggtagccaatttggacaccaaagagcccattctttgcaatttctgaaa 299
|||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 cacatggtcttaggaagctgatttggacaccaaagagcccattctttgcaacttctgaaa 500
Query: 300 tgttgag------ga---att-tt-----ttttttaatttagtaagagaaggcttcttgg 344
||||||| || ||| || |||||| |||||||||||||||||||||||
Sbjct: 501 tgttgagatgctggagggattattattattttttt--tttagtaagagaaggcttcttgg 558
Query: 345 gcagcctcttgaatcacttctgaatactttaaattctatcgatgcagctagggaagatac 404
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 559 gcagcctcttgagtcacttctgaacactttaaattctatcgatgcagctagggaagatac 618
Query: 405 tcaatgggcatagctcttggtgtacaaacatgaggacttgattacatgccctgatccaat 464
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 619 tcaatgggcatagctcttggtatacaaatatgaggacttgattacatgccctgatccaat 678
Query: 465 atcaagtcagaca-tggtaactcacctgtaattccaggacatagagagtaagataggagg 523
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 679 atcaagtcagacaatggtaactcacctgtaattctaggacatagagagtaagataggagg 738
Query: 524 cagagacaggacaagg 539
||||||||||||||||
Sbjct: 739 cagagacaggacaagg 754
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 940
Length adjustment: 10
Effective length of query: 529
Effective length of database: 930
Effective search space: 491970
Effective search space used: 491970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
