XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGT
CAGAAATTTCTGATTGAAAATAATGTCTGACAGCATTCTTCTGATTGTAT
TTCAATGAATATCTAAAACAAAAGCATATTTAATACAGAGAAAGCAAAAT
AAAAGGCATAGGATTATGGAGGGAGTCCATTGTACTAGCCTACCAAACAG
TTCATCACACAGATCAAACTAATTTCATTCACTACATAGCACAGTAAAAA
TAAACTGGCATCTGTAAGTAGGCTTTCCCATCTTGTTAGGTTTAGTAATA
ATTTTCATACTAGAGAAAACAGAAAGGAAAGCTTTACTGCTTCTGTGCTA
CTAGGATCAAACAAACAAGTTACTCTACCACTGGACTATATTCTGAGCCA
AGGAAAAAACTTAAGATTATAACAAATTATGAAATGCAGGGAGTCTATGG
GAATTCACATTTCTAGAAAAAGGGAAAAACAAGAGCAAAAATACAAGTGG
TATATAGAAGGTATGTGACAACTAGAATTTGAACAAAGATGGTTACAAAA
GCTGAGGAAAAATTGCTAGATAGAACAAAGATCATATCTCANATGCTACT
GTTTATCAGTAGGAAAATGTCAACTTCTGCACTAATGACACTGCCTTTGA
ATATACTANGAATTACTCTCCAACATTCCTGATGTTCACCATGGCTANGA
CGGATAAACGGGATATCTTGTCTTGACACCGCAAN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTACCTGAAGAATACCGAATGGCTGAGAAGCACC
TGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACA
ACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAACTC
AGGTGACAGGAGATGCTGGAGAGGATATGGAGAAAGAGGAACACTCCTCC
ATTGTTGGTGGAATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGG
CGGTTCCTCAGAAAATTGGACATAGTACTACTGGAGGATCCCGCAATATC
TCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTAAGAAGGACACAT
GCTCCACTATTTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAA
GAACCCAGATGTCCTTCAACAGAGGAATGGATACAGAAAATGTGGTACAT
TTATACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAAT
TCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACC
CAATCACAAAGGAACTCACACAATATGTACTCAATGATAAGTGGATATTA
GCCCAGAAACTTAGAACACCCAAGATATAAGATACAATTTGTGAAACACA
TGAAACTCAAGAAGAACGAAGACCAAA

Query= MSMg01no384_k10.b1 MSMg01no384_k10.b1 CHROMAT_FILE:
MSMg01no384_k10.b1 PHD_FILE: MSMg01no384_k10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:59 2005
         (573 letters)



>mm_chr3_86424308_86425280
          Length = 973

 Score = 1079 bits (558), Expect = 0.0
 Identities = 566/569 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtcagaaatttctgattgaaaataatgtctgacagcattcttctgattgtatt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 gaattctgtcagaaatttctgattgaaaataatgtctgacagcattcttctgattgtatt 714

                                                                       
Query: 65  tcaatgaatatctaaaacaaaagcatatttaatacagagaaagcaaaataaaaggcatag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 tcaatgaatatctaaaacaaaagcatatttaatacagagaaagcaaaataaaaggcatag 654

                                                                       
Query: 125 gattatggagggagtccattgtactagcctaccaaacagttcatcacacagatcaaacta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 653 gattatggagggagtccattgtactagcctaccaaacagttcatcacacagatcaaactc 594

                                                                       
Query: 185 atttcattcactacatagcacagtaaaaataaactggcatctgtaagtaggctttcccat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 atttcattcactacatagcacagtaaaaataaactggcatctgtaagtaggctttcccat 534

                                                                       
Query: 245 cttgttaggtttagtaataattttcatactagagaaaacagaaaggaaagctttactgct 304
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 cttgttaggtttagtaatcattttcatactagagaaaacagaaaggaaagctttactgct 474

                                                                       
Query: 305 tctgtgctactaggatcaaacaaacaagttactctaccactggactatattctgagccaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tctgtgctactaggatcaaacaaacaagttactctaccactggactatattctgagccaa 414

                                                                       
Query: 365 ggaaaaaacttaagattataacaaattatgaaatgcagggagtctatgggaattcacatt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ggaaaaaacttaagattataacaaattatgaaatgcagggagtctatgggaattcacatt 354

                                                                       
Query: 425 tctagaaaaagggaaaaacaagagcaaaaatacaagtggtatatagaaggtatgtgacaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 tctagaaaaagggaaaaacaagagcaaaaatacaagtggtatatagaaggtatgtgacaa 294

                                                                       
Query: 485 ctagaatttgaacaaagatggttacaaaagctgaggaaaaattgctagatagaacaaaga 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 ctagaatttgaacaaagatggttacaaaagctgaggaaaaattgctagatagaacaaaga 234

                                        
Query: 545 tcatatctcanatgctactgtttatcagt 573
           |||||||||| ||||||||||||||||||
Sbjct: 233 tcatatctcaaatgctactgtttatcagt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space:   542169
Effective search space used:   542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)