XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTT
GTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGTTTTTCTGAAGT
CCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGAT
TTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTT
ATTGACAGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAAGTCCC
ATTTGTAAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGG
AATTTTTCCCCTGTGCCCATATCTTCAAAGCTTTTCCCGACTTTCTCCTC
TATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCTTTGATCCATTTAT
ATTTGACCTTAGTAAAAGGATATAAGTATGGATCGATTCGCATTCTTCTA
CATGATAACAACCACTTGTGCCAGCACCAATTTTTGAAAATGCTGTCTTT
CTTCCACTGGATGGTTTTAGCTCCCTTGTTGAAGATCAAGTGACCATAGG
TGTGTGGGCTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTATTTGT
CTGTTTCTATATCAGTATCACGTACCTTTTATCTCAATTGCTCTGTTAGT
AAGTTTTATGTCATGCCCGTGTGCTTCCTCCCTTAGTTCCTTCTTTCTCT
GACATTACTTTTTGCTTTTCCT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXATTGGAAAACATTTCTGAAGATGTGGGAACTGTG
AAATAATATTTCCTAGTCATGGTTATCACTTATTTTCCAGTAGTTTCTTC
TCTACTCTTTTTCCATTTTTATTTATCTCTTTATTCAATTACTTTTAATA
TGATTACTACCTATTTTTAGCTAGTATAATACGTAAAGCACAACTTCTAT
CTCTACATATTGCCCAATATTTTCATAAGATTCAGGGCTGTTTTCCTGAC
ATTTGTTTCCTGAATCATTGTTTTTTTTTTTTCAGTATTGCTGGTCTTAC
AATATTCTATATCTGGTATATTTTAGTATATCTATTTATAATTTTTCTTC
ATATGTATTATATGTCATATTTCATAATATATTTTTCAGAATATATGTTT
TATCCACATATGAATGAAATTACATATATGTTTACTACCTTACCAGTTTT
GCTGAATAGTAATAGTAATATTGAATGAGGGTCAACTGGAGAGGGATGAG
ACTTGTAAAGCACACCTTTGTGTGGTTCTGTGAGGTTGTTTCTAGCTCCT
ACACAGTCCTCTGTCTCTTTCTCTCTGCCTCTCTTTATGTCTCTGGATGT
CTGTTGCTCTCTTCCATTGTGCCTTCTCCATGTCTCTATGACCGTCCCTG
TCCTCACTGCTGAA

Query= MSMg01no384_o05.g1 MSMg01no384_o05.g1 CHROMAT_FILE:
MSMg01no384_o05.g1 PHD_FILE: MSMg01no384_o05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:17 2005
         (583 letters)



>mm_chr3_11944657_11945641
          Length = 985

 Score = 1031 bits (533), Expect = 0.0
 Identities = 579/613 (94%), Gaps = 30/613 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   attggaaaacatttctgaagatgtgggaactgtgaaataatatttcctagtcatggttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 attggaaaacatttctgaagatgtgggaactgtgaaataatatttcctagtcatggttat 232

                                                                       
Query: 61  cacttattttccagtagtttcttctctactctttttccatttttatttatctctttattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 cacttattttccagtagtttcttctctactctttttccatttttatttatctctttattc 292

                                                                       
Query: 121 aattacttttaatatgattactacctatttttagctagtataatacgtaaagcacaactt 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 293 aattacttttaatatgattactacctatttttagctagcataatacgtaaagcacaactt 352

                                                                       
Query: 181 ctatctctacatattgcccaatattttcataagattcagggctgttttcctgacatttgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ctatctctacatattgcccaatattttcataagattcagggctgttttcctgacatttgt 412

                                                                       
Query: 241 ttcctgaatcattgttt----------------------------tttttttttcagtat 272
           |||||||||||||||||                            |||||||||||||||
Sbjct: 413 ttcctgaatcattgtttgttttttttttttttttttttttttttttttttttttcagtat 472

                                                                       
Query: 273 tgctggtcttacaatattctatatctggtatattttagtatatctatttataatttttct 332
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tgctggtcttacaatattctatatctggtatattttagtatatctatttataatttttct 532

                                                                       
Query: 333 tcatatgtattatatgtcatatttcataatatat--ttttcagaatatatgttttatcca 390
           ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 533 tcatatgtattatatgtcatatttcataatatatatttttcagaatatatgttttatcca 592

                                                                       
Query: 391 catatgaatgaaattacatatatgtttactaccttaccagttttgctgaatagtaatagt 450
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 catatgaatgaaatgacatatatgtttactaccttaccagttttgctgaatagtaatagt 652

                                                                       
Query: 451 aatattgaatgagggtcaactggagagggatgagacttgtaaagcacacctttgtgtggt 510
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 aatattgaatgaggattaactggagagggatgagacttgtaaagcacacctttgtgtggt 712

                                                                       
Query: 511 tctgtgaggttgtttctagctcctacacagtcctctgtctctttctctctgcctctcttt 570
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 tctgtgaggttgtttctagctcctacacagtcctctgtctctttctctctgcctctcttt 772

                        
Query: 571 atgtctctggatg 583
           |||||||||||||
Sbjct: 773 atgtctctggatg 785


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 985
Length adjustment: 10
Effective length of query: 573
Effective length of database: 975
Effective search space:   558675
Effective search space used:   558675
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)