XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTCTT
TTTAATAGCTGAGTAGTACTTCATTGTGTAAATGTACCACATTTTCTGTA
TCCATTCCTCTGTTGAGGGACATCTGGGTTCTTTCCAGCTTCTGGCTATT
ATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCCTACCGGT
TGGAACATCTTCTGGGTATATGCCCAGGAGAGGTATTGTGCAATCTTCCA
ATAGTGCTATGTCTGATTTTCTGAGGAAACCACCAGACTGATTTCCAGAG
TGGTTGTACGAGCTTGCAATCCCACCAACGATGGAGGAGTGTCCCTCTTT
CTCCACATCCTCGCCAGCATCTGCTGTCATCTTGAATTTTTTATCTTAGC
CATTCTGACTGGTGTGAGGTGGAATTTATAAAATTCCTAGGCAAATGGAT
AGACCTGGAGGGCGTCATCCCGAGTGAGGTAACCCAATCACAAAAGAACT
CACATGATATGTATTCACTGATAAGTGNATATTAGCCCAGAAACTTAGAA
TACCCGAGATACNAGATACAATTTTGCAAAACACTTGTAACTCTCGAAGA
ACGAGGACCCAAGTGTGGACCCTTTGTCCCTTCTTAAAATTCAAAACAAA
CGGCCCTGGAAGAGTTTCTGAAGAAAAAATTGGAGCTTGAAAAAAAGGAT
GGCCTCCTAAAATTGGCTTACCCGGGAACATTCCTCAACAACTCCAAACT
GGACCCTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCAGGATAGCCAGGGCTACACAGAGAAACCCTGTCT
CAAAAACAAAAACAAAAAGAAAAAAAAGAAAGAAAGAAAGAAATGTAGTG
TTTATTTTTTATCTATAGTACCAAATAATGTCCTGGAAGATAACAGATGG
GTGATGAGAAACTGCGTGGACAAAGCATTTGTTTGTTTGTATTTTTGTTT
TTGTTTTTTATTTACAGTTCATATTTACTATGAAGGAAACTTGCAACTAG
AATTTCATTTAATCCCTATGAGTCAGATGGTGCGCCTCGGGGCTTTTAGT
TATTCCAATGCTGTTTGCCTATTTTGCTTAATCTTATTTTTACTTTCACA
AAGTATCTAATGTGTCAATTAAAGCAACCACAAAAGACTGACCTGACCCA
GGAGTACTGACTTAGTACTACTAACTAAGTTACTCCCTGTGTGTGTCTGC
CTACCCATGAACATGGGTAACAAATTTCCCTTTTCCGGAGGNCCTGACTC
ATCTTCTTATCTCCTACTCACCCCTTTTAAGAGGCCCCCTGCCTCCCCCC
AGAAAGGGGGCCATTGACCGAACTCCGGCCTTTTTTCTTATCGGCCCCCC
CAAATGGGGGGCTTTTCCCACCTAAACCCTGCCCCCCCCTTAAACATACT
TGTGCTCCCGAAAACTCTTTCTTAACCCTCAATTATCTTTTGCTTCGCAT
AAAACCTCCGTTTTTTTTTCTCTN

Query= MSMg01no385_c24.g1 MSMg01no385_c24.g1 CHROMAT_FILE:
MSMg01no385_c24.g1 PHD_FILE: MSMg01no385_c24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:41 2005
         (420 letters)



>mm_chr3_130041263_130042081
          Length = 819

 Score =  677 bits (350), Expect = 0.0
 Identities = 395/420 (94%), Gaps = 20/420 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggatagccagggctacacagagaaaccctgtctcaaaaacaaaaacaaaaagaaaaaa 60
           ||||||||||||||||| |||||||||||||||||      |||||||||||||||||| 
Sbjct: 793 caggatagccagggctatacagagaaaccctgtct------caaaaacaaaaagaaaaa- 741

                                                                       
Query: 61  aagaaagaaagaaagaaatgtagtgtttattttttatctatagtaccaaataatgtcctg 120
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ---aaagaaagaaagaaatgtagtgtttattttttatctatagtaccaaataatgtcctg 684

                                                                       
Query: 121 gaagataacagatgggtgatgagaaactgcgtggacaaagcatttgtttgtttgtatttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||        ||
Sbjct: 683 gaagataacagatgggtgatgagaaactgcgtggacaaagcatttgtttg--------tt 632

                                                                       
Query: 181 tgtttttgttttttatttacagttcatatttactatgaaggaaacttgcaactagaattt 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 tgtttttg-tttttatttacagttcatatttactatgaaggaaacttgcaactagaattt 573

                                                                       
Query: 241 catttaatccctatgagtcagatggtgcgcctcggggcttttagttattccaatgctgtt 300
           |||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 572 catttagtccctatgagtcagatgttgcgcctc-gggcttttagttattccaatgctgtt 514

                                                                       
Query: 301 tgcctattttgcttaatcttatttttactttcacaaagtatctaatgtgtcaattaaagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 513 tgcctattttgcttaatcttatttttactttcacaaagtatctaatgggtcaattaaagc 454

                                                                       
Query: 361 aaccacaaaagactgacctgacccaggagtactgacttagtactactaactaagttactc 420
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 453 aaccacaaaagactgacctgacccagaagtactgacttagtactactaactaagttactc 394


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 6
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 819
Length adjustment: 9
Effective length of query: 411
Effective length of database: 810
Effective search space:   332910
Effective search space used:   332910
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)