BAC Information

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BAC

Clone NameMSMg01-385J22
Chromosome3 (Build37)
Map Location 73,929,715 - 73,930,087
singlet/doubletsinglet
Overlap genenone
Upstream geneBche, LOC667425
Downstream geneLOC619764, LOC667434, LOC100041551, EG667459, BC050789
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-385J22.T7 (MSMg01no385_j22.b1)MSMg01-385J22.TJ (MSMg01no385_j22.g1)
ACCAG488778AG488779
length738751
length of high quality
(start - end)		575 (33 - 607)373 (60 - 432)
definitionCHROMAT_FILE: MSMg01no385_j22.b1 PHD_FILE: MSMg01no385_j22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:14 2005CHROMAT_FILE: MSMg01no385_j22.g1 PHD_FILE: MSMg01no385_j22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGTATA
GCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGGAGTCCTCC
TTCTTGAGTTCTTTATATATATTGGGTATTAGTCCCATATCTGATTTAGG
ATAGGTAAAGATCCTTTCCCAATTTGCTGGTGGTCTTTTTGTCTTATTGA
CAGTGTCTTTTGCCTTACAGAAGCTTTGCAGTTTCATAAGGTCCCATTTG
TCAATTCTCGATCTTAGAGCACAAGCTATTGCTGTTCTATTCAGGAATTT
TTCCCCTGTGCCCATATCTTCGAGGCTTTTCCCCACTTTCTCCTTTATAA
GTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGAATTG
AACTTAGTACAAGGAGATAGGAATAGATCGCTTCACATTCTTCTGCATGT
TAACAACCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCTTTTTTCC
ACTGGATGGTTTTAGCACCCTTGTCGAAGATCAAGTGATGATAGGTGTGG
GTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTTGTCTGTCAT
TATACCAGTACCATGTAGTTTTTATCACAATTGCTCTGTAGTAAAGCTTT
ATGCCAGGCATGGTGATTCCCCCAGAGGTTCTTTTTTCCTTGATAAGAAT
TTTTGCCATCCCTAAGGCTTTTGTTATTTCCGAGGAAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXATTTTGGATATTACAGCAGGACTCAGCTCTAAGGGTGAGAA
AGGCACAGTCAGATGTCCCAACGTACCTGCTGGAGTTAGTCTTAGACTCT
CAGGCACCTGCTGGATGCTGTGGAAGAGCCAGTTCTGGGGTCCCTGGGCT
GCACAGAGCCCAGGGTCATCAGGATCTCAGTCTTAGATACTGCAGATACC
ACTGGATGTTGCTGAAGAGCTGAGAATGGAGCAGGAACCCACGGGCAGAA
TCTAGCCCAGGGCAGGAGGAGAGGTTACTGCAGGGAGGAGAGTCATTGAC
TTGCTCAGTGGGAGGCTTGGTTTGGCAAAAGTCCTGTATGGGAACATAGA
GTGGCTTCCCACTGAAGATTAGATGTGAGGCTCTTTAGACGTGAACCTGC
TCCACTACTCCAGCATGGAGGGTCCAGATGATAAAAGGAAATTCCTGGTT
TTTAAGTGTCTATTGTTGATAGGCCCATAGAGGCATAGTGTTCAATTTTT
AATGCCTGTATGTTCATTTGTCAAGAGTTTCTTTATATATTTTTTTATTT
CCCCACATCCCCTTATTTTTCCTTCCTTTCATCTTCTCACCTCTTTTTCT
TTTCCTTTTTTTTCCCCCCCCTCTTCTTTTTTTTTTCCTTTTGTCCCTCC
TTATTTCCTTTTTTACTCCTCGGTAATCTCTCCCTATTTCCTTCCCCCCT
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no385_j22.g1 MSMg01no385_j22.g1 CHROMAT_FILE:
MSMg01no385_j22.g1 PHD_FILE: MSMg01no385_j22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:14 2005
         (373 letters)



>mm_chr3_73929515_73930287
          Length = 773

 Score =  683 bits (353), Expect = 0.0
 Identities = 368/373 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attttggatattacagcaggactcagctctaagggtgagaaaggcacagtcagatgtccc 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 attttggatattacagcaggactcagctctaggggtgagaaaggcacagtcagatgtccc 260

                                                                       
Query: 61  aacgtacctgctggagttagtcttagactctcaggcacctgctggatgctgtggaagagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacgtacctgctggagttagtcttagactctcaggcacctgctggatgctgtggaagagc 320

                                                                       
Query: 121 cagttctggggtccctgggctgcacagagcccagggtcatcaggatctcagtcttagata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagttctggggtccctgggctgcacagagcccagggtcatcaggatctcagtcttagata 380

                                                                       
Query: 181 ctgcagataccactggatgttgctgaagagctgagaatggagcaggaacccacgggcaga 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 ctgcagataccactggatgttgctgaagagctgagaatggagcagggacccacgggcaga 440

                                                                       
Query: 241 atctagcccagggcaggaggagaggttactgcagggaggagagtcattgacttgctcagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atctagcccagggcaggaggagaggttactgcagggaggagagtcattgacttgctcagt 500

                                                                       
Query: 301 gggaggcttggtttggcaaaagtcctgtatgggaacatagagtggcttcccactgaagat 360
           ||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||
Sbjct: 501 gggaggcttggtttggcaaaagtcctgtatgggaacacagagtggcctcccgctgaagat 560

                        
Query: 361 tagatgtgaggct 373
           |||||||||||||
Sbjct: 561 tagatgtgaggct 573


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space:   278096
Effective search space used:   278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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