BAC Information

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BAC

Clone NameMSMg01-387I22
Chromosome3 (Build37)
Map Location 144,783,826 - 144,949,083
singlet/doubletdoublet
Overlap geneOdf2l
Upstream geneLOC100039952, Lmo4, LOC545572, Hs2st1, Sep15, LOC435761, Sh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448, Clca6, Clca3, Clca5
Downstream geneCol24a1, 2410019A14Rik, Cyr61, Ddah1, LOC100040331, Bcl10, 2410004B18Rik, Syde2, Wdr63, Mcoln3, Mcoln2, Edg7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-387I22.T7 (MSMg01no387_i22.b1)MSMg01-387I22.TJ (MSMg01no387_i22.g1)
ACCAG490262AG490263
length818803
length of high quality
(start - end)		218 (66 - 283)401 (77 - 477)
definitionCHROMAT_FILE: MSMg01no387_i22.b1 PHD_FILE: MSMg01no387_i22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:38 2005CHROMAT_FILE: MSMg01no387_i22.g1 PHD_FILE: MSMg01no387_i22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,948,868 - 144,949,083)(144,783,826 - 144,784,226)
sequence
CCCCTATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATAAGATCTCGCTGTTCTCTTCGGGAAGAACCGCACATGCACTGTG
TCATATAAAACCTATTTATGTGTGACAGATTACAAATGATAGGACCTCAT
ACACCTCCCTCGTGAGGGAGGGAAACAGATGAAGATCCTTAGCTTAAACG
GGGAAGATTTTTAAATTTTAATCCAATCTGGATTTTTACCCTTTTACTAC
TCAAACTGTATAGAGCCTTTTCTCCACGGTGCCCTTTCTAAGGGTTTTAG
GCTGGGGTTTTCCTCTTTGCTAGGCTTATCCCCAGTCTTTCATAAATGTA
GTCACATGTGTTTAGTCTAAACAACCTGGACCGAGTTGGTCGACTTTTGT
GCCATTTCCCCCTTCCCGCACCTACCTAGATCAGTTCTGCCTCCCTCACT
CCTCCTCCCTGCGCCCCTTTCCCCCCCTCTTCCTTTCTTTTCCTCCCTCC
CCCCTTTTTCTCCTTCCTCCCGCCTCCGCTTCCCTCCCTTTTTCCATTTT
CCCCCCTCTCCTATCTTCTGCCTTCCCCCCTCTCCCCCCTTTTCCTCCCT
TATTCTTCCCTCCCCCCTCCCTTCCCCCCCTCCCTCCCCTTTTTCCCCTC
CCCCCTCCCTATTCCCCCTATTCCCCCCCCCTTTTCCCTCCCTTCCTTTC
CCTCTTCCCTTCCTCTCTCCTCCACCCCCTTTTCTCTTTTTCTTTTTCCC
CCCCTCTTTCCCCCTCTCTCATCTTTCCCCCCTCATTTTCCCTCTCCCTC
TTCCCCCCCTTTTTTTTN

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATGCTTTCTCGTCAGGGAGAGTA
GTTTTTAACCAACATTTGCCTAAACTACTCTAGGTGCTATGATCTTTTCT
AATGCTATTGTTCATGAGCATCCATCCCTTAACACACTTACTGATCAAAA
TGGAACACAATACTGTGGTTATAGCTACATCTGCAATGCCATTATCACCC
TTGACAGGTTAAAAAAAATCATAATACTGATGGTGACGAATTTGCTCAGA
CTTGTGTAGGATGGGTCACTAACAAGTTGTACAGAAATGCAATGTTTGTC
AGTTAGCCATGCCTTGCACATAACTGAAAACTTGGGCAGAACACTCAGTT
TCTATTAGAAAAAAATGCCTTTAGTGAACTGAAATGAGAGTATATTTTAT
AAAGATGGGATATTTTATAAATGAAAGAGAAGTGTAGCATTTGGTTCCGC
AGGCAAGCATTTTTATTGTAAGGAAAGCATTATATTTGTTCATCTACCTT
TTGCTCCCGAATTGGCCTTACCCATAACATGCGAATTTCCTCCCACTTCG
GGTCCCCCTTCTCCTTTATTACATAAATTTCTTTTAAATTCCTTGGAAAA
AAATGTGTTTCTCCCCCTCTTTGTTCCCCTTCATCTAGTCTAATTACAAT
ACCCCACAAACTTCTTCTCTTCTATCTCCTCCCTTCTCTTTTCTTTCTCT
TGTCTGCATGATCCTCCTCTAGTTTTTTCTTTCCCCTATAACACTCTCTT
TCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no387_i22.b1 MSMg01no387_i22.b1 CHROMAT_FILE:
MSMg01no387_i22.b1 PHD_FILE: MSMg01no387_i22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:38 2005
         (218 letters)



>mm_chr3_144948668_144949285
          Length = 618

 Score =  402 bits (208), Expect = e-117
 Identities = 214/216 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgttctcttcgggaagaaccgcacatgcactgtgtcatataaaacctatttatgtgtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 416 ctgttctcttcgggaagaaccgcacatgcactgtgtcatataaaacctatttatgtgtgg 357

                                                                       
Query: 61  cagattacaaatgataggacctcatacacctccctcgtgagggagggaaacagatgaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 cagattacaaatgataggacctcatacacctccctcgtgagggagggaaacagatgaaga 297

                                                                       
Query: 121 tccttagcttaaacggggaagatttttaaattttaatccaatctggatttttaccctttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 tccttagcttaaacggggaagatttttaaattttaatccaatctggatttttaccctttt 237

                                               
Query: 181 actactcaaactgtatagagccttttctccacggtg 216
           |||||||||||||||||||||||||||| |||||||
Sbjct: 236 actactcaaactgtatagagccttttctgcacggtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 218
Length of database: 618
Length adjustment: 9
Effective length of query: 209
Effective length of database: 609
Effective search space:   127281
Effective search space used:   127281
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no387_i22.g1 MSMg01no387_i22.g1 CHROMAT_FILE:
MSMg01no387_i22.g1 PHD_FILE: MSMg01no387_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:38 2005
         (401 letters)



>mm_chr3_144783626_144784426
          Length = 801

 Score =  768 bits (397), Expect = 0.0
 Identities = 400/401 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatgctttctcgtcagggagagtagtttttaaccaacatttgcctaaactactctaggtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 tatgctttctcgtcagggagagtagtttttaaccaacatttgcctaaactagtctaggtg 260

                                                                       
Query: 61  ctatgatcttttctaatgctattgttcatgagcatccatcccttaacacacttactgatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctatgatcttttctaatgctattgttcatgagcatccatcccttaacacacttactgatc 320

                                                                       
Query: 121 aaaatggaacacaatactgtggttatagctacatctgcaatgccattatcacccttgaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaatggaacacaatactgtggttatagctacatctgcaatgccattatcacccttgaca 380

                                                                       
Query: 181 ggttaaaaaaaatcataatactgatggtgacgaatttgctcagacttgtgtaggatgggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggttaaaaaaaatcataatactgatggtgacgaatttgctcagacttgtgtaggatgggt 440

                                                                       
Query: 241 cactaacaagttgtacagaaatgcaatgtttgtcagttagccatgccttgcacataactg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cactaacaagttgtacagaaatgcaatgtttgtcagttagccatgccttgcacataactg 500

                                                                       
Query: 301 aaaacttgggcagaacactcagtttctattagaaaaaaatgcctttagtgaactgaaatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaacttgggcagaacactcagtttctattagaaaaaaatgcctttagtgaactgaaatg 560

                                                    
Query: 361 agagtatattttataaagatgggatattttataaatgaaag 401
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agagtatattttataaagatgggatattttataaatgaaag 601


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 801
Length adjustment: 9
Effective length of query: 392
Effective length of database: 792
Effective search space:   310464
Effective search space used:   310464
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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