Query= MSMg01no388_d14.b1 MSMg01no388_d14.b1 CHROMAT_FILE:
MSMg01no388_d14.b1 PHD_FILE: MSMg01no388_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:30 2005
(513 letters)
>mm_chr3_77804721_77805633
Length = 913
Score = 924 bits (478), Expect = 0.0
Identities = 492/502 (98%), Gaps = 10/502 (1%)
Strand = Plus / Plus
Query: 12 gaattcttcctctcctcttcttgcatcttgtctccttgcctctagggacatggaagtcct 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 gaattcttcctctcctcttcttgcatcttgtctccttgcctctagggacatggaagtcct 271
Query: 72 tcctgttctttctaaccagcaattggcccatggcttttttactgacagatcaagagccaa 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tcctgttctttctaaccagcaattggcccatggcttttttactgacagatcaagagccaa 331
Query: 132 ttggggaacaatactgtagcatcagaaccactcctaccgaccattactaatccccatgac 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ttggggaacaatactgtagcatcagaaccactcctaccgaccattactaatccccatgac 391
Query: 192 cccaaatagtcactgattcactatgtcttccttactgtcccaagtctatgtcatagtatt 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 cccaaatagtcactgattcactatgtcttccttactgtcccaagtctatgtcatagtatt 451
Query: 252 ttccttcacattatttccacttcccactctccctccagctcctcctcctcctcctcttcc 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ttccttcacattatttccacttcccactctccctccagctcctcctcctcctcctcttcc 511
Query: 312 tccttctctttttcctttttttcttcttcttccacccctctcacatcatgcataaccagt 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 tccttctctttttcctttttttcttcttcttccacccctctcacatcatgcataaccagt 571
Query: 372 actgttcacatactctttaatgcctggtcttctactgaattctttttttttttaacatgt 431
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 572 actgttcacatactctttaatgcctggtcttctactgaattcttttttttt--aacatgt 629
Query: 432 atttatttatttatttatttatttatttatttatttatttatttatttatttaatgtatg 491
||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 630 atttatttatttatttatttatttatttatttatttatttattta--------atgtatg 681
Query: 492 tgaatacactgtcactctcttc 513
||||||||||||||||||||||
Sbjct: 682 tgaatacactgtcactctcttc 703
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space: 454209
Effective search space used: 454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no388_d14.g1 MSMg01no388_d14.g1 CHROMAT_FILE:
MSMg01no388_d14.g1 PHD_FILE: MSMg01no388_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:30 2005
(620 letters)
>mm_chr3_77980030_77981050
Length = 1021
Score = 787 bits (407), Expect = 0.0
Identities = 464/483 (96%), Gaps = 3/483 (0%)
Strand = Plus / Minus
Query: 140 cttagagaattttaatatgtatctttaaaataacaacttatcattatactgatagattaa 199
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 1021 cttagagaattttaatatgtatctttaaaataacaacgtatcattatactgatagattca 962
Query: 200 taggcgtattaatctcttctcatttaagaagcttgtatttgtgacttagagttggtaatt 259
||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 961 taggcatattaatcccttctcatttaagaagcttgtatttgtgacagagagttggtaatt 902
Query: 260 agcatagagaccaacaacctcatcaaagtaaagaaaataagcaac-attggaatgtttgg 318
| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 901 aacatagagaccaacaacctcatcaaagtaaagaaaataagcaacta-tggaatgtttgg 843
Query: 319 ctctaagtggaatccatctatttgtctgtatatctgtctgtctatatgtatgtctatatt 378
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 ctctaagtggaatccatccatttgtctgtatatctgtctgtctatatgtatgtctatatt 783
Query: 379 gttacatatatttctagacattcctcccaaaattcaggtaatctttgagaagacaggaaa 438
||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 782 gttacatatatttttagacattcctcccaaaattcagggcatctttgagaagacaggaaa 723
Query: 439 caatgagtctaagagacagaggcagtggatgattataagaaaacagtgtacatatgaagt 498
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 722 caatgagtctaagagacagaggcagtggatgattataagaaaacagtatacatacgaagt 663
Query: 499 taccctaattttgacagtgtgcctaagaccagtgaaaggataagccagaccaaatcctag 558
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 662 taccctaattttgacagtgtgccaaagaccagtgaaagcataagccagaccaaatcctag 603
Query: 559 catg-tgaggagagttggacacaaaatcttagctcaacgggtaagttggttatactccag 617
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 602 catgatgaggagagttggacacaaaatcttagctcaacgggtaggttggttatactccag 543
Query: 618 ttg 620
|||
Sbjct: 542 ttg 540
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1021
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1011
Effective search space: 616710
Effective search space used: 616710
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
