BAC Information

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BAC

Clone NameMSMg01-388P06
Chromosome3 (Build37)
Map Location 104,322,030 - 104,322,538
singlet/doubletsinglet
Overlap genenone
Upstream geneSyt6, Atg4a-ps, LOC100043538, Olfml3, Hipk1, Dclre1b, Ap4b1, Gm566, Ptpn22, LOC668452, Rsbn1, Phtf1, Magi3, EG433634, LOC668622, Lrig2
Downstream geneSlc16a1, EG624251, 7530404M11Rik, Ppm1j, Rhoc, Mov10, Capza1, St7l, LOC100043572, Wnt2b, Cttnbp2nl, 4930564D02Rik, 1700095B22Rik, Kcnd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388P06.T7 (MSMg01no388_p06.b1)MSMg01-388P06.TJ (MSMg01no388_p06.g1)
ACCAG491324AG491325
length807736
length of high quality
(start - end)
345 (59 - 403)515 (71 - 585)
definitionCHROMAT_FILE: MSMg01no388_p06.b1 PHD_FILE: MSMg01no388_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:24 2005CHROMAT_FILE: MSMg01no388_p06.g1 PHD_FILE: MSMg01no388_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGTCGCTAAANGAATCACTATATCGAGAGGAGCCGCGGAATTCAATGCCA
TTCCGAGCTACTTAAGACCCTGTCTCAAAAAGAAAAAAAAAATTTCCCCA
TCTCTTCAACCTTGCCCACCTGGTTACCAGGCAACCACTAGACTGAGGTC
TCACTTTAAGGAAGGCAATCCAGGTAACTCCCTACAGGCATGCCCAGAGG
CCATCATCTCTCAAATGATTCTAGGTTATGTTAAATTAGCACTATCACAA
ATATCGGTCTTTGTTTTAAAACCAGGATAATGTTGGCCTCAGAAAAAAGT
AGAAAAGTTCTCACTCTGTTTCTACACCCTTGAAGGGCTATATAAAGTTT
GTACTATTTAGTTTTTTAGTTGGTAGAATTCACTTTTGAAGCGATCTGAC
TTCACCCCCCCCACCCCCCTCCAGTGTGTGTGTGTGCGTGTGCGCGTGCG
CCCGATCCGCGCGCGCGCTCGCATCCCGTTATTCCCAAACCCTTCCCGCC
TACCCTGAACCCCTTGCCCCGTTATACCCCCTCCCACCCCTCCCGTCTCT
CTCCCTCTCCGGCCCTTCCTCTCCCCTCTGTTCCCCCTCCCCCTTCCCTC
TTCTTTCCTCCACCTCTTCCGTCTTCCCTTTCCACACCCTCCCTCTCCAC
CCCTCTCTTCGCGCATTTCCTACCTTCCTGTCTCCATCCCTTGCCCCGCC
ACTCTTCCTTCTTTTCTCCCTCCTTTTTCCCCTTCTTCCCCCTCCACCCT
ACCTCCCACCCCCCTTCTCCCCCATCTCCCNCCCTCCCCTTCACTCGTCC
TCTCCCN
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATGGCAATCCCCTTGCTTCAGACTCCTGCA
TTCTGGGATTACATGTATGAGCTACCACACCCAGATCTTCTTCACTTTGA
TGTAGTCAGATGCTATCAAGCAAAAAACGCCTCCAAGAGCATTACTCAGC
TTTTCATCTTTTTTTTTAAAGATTTATTTATTTATTATATGTAAGTACAC
TGTAGCTGTCTTCAGACACTCCAGAAGAGGGAGTCAGATCTCGTTACAGA
TGGTTGTGAGTTTTTATGTGGTTGCTGGGATTTGAACTCCGGACCTACGG
AAGAACAGTTGGGTGCTCTTACCCACTGAGCCGTCTCACCAGCCCTCAGC
TTTTCACCCCCACAACAAATATCTGCTATAGTAAAGTTATAAAAATGGTT
CATGTTGGCTTCTAGTAATTGAAGTTCAGAAGTTTATGTGGCCCATGGCT
TTGGCACGCCACAGCAGGAGGGCATAGTAAAGCAGAAGTGCTTATCTCAT
GGCCAGGAGGCAAAGAGAAAAAGGGGAAGAAGTGCCTGGGGTCCACTGTC
CCCAAGGACCTGAAGATCTCCCAGCTGTCCCCACCTCAGATGCATTCCAC
TGACTCCCCACAGTGCCTAGTGAAATAGCGTGCTTTTTCCACCAGAGCCT
CTGGGGGAACCCACAGTCTTCACGCCTTTCAGGGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_p06.g1 MSMg01no388_p06.g1 CHROMAT_FILE:
MSMg01no388_p06.g1 PHD_FILE: MSMg01no388_p06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:24 2005
         (515 letters)



>mm_chr3_104321824_104322738
          Length = 915

 Score =  843 bits (436), Expect = 0.0
 Identities = 493/520 (94%), Gaps = 16/520 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggcaatccccttgcttcagactcctgcattctgggattacatgtatgagctaccacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 atggcaatccccttgcttcagactcctgcattctgggattacatgtatgagctaccacac 266

                                                                       
Query: 61  ccagatcttcttcactttgatgtagtcagatgctatcaagcaaaaaacgcctccaagagc 120
           ||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ccagatcttc---actttgatgtagtcagatgctatcaagcaaaaaacgcctccaagagc 323

                                                                       
Query: 121 attactcagcttttcatctttttttttaaagatttatttatttattatatgtaagtacac 180
           |||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||
Sbjct: 324 attactcagcttttcatcttttttt---aagatttatttatttattatatgtaagtacac 380

                                                                       
Query: 181 tgtagctgtcttcagacactccagaagagggagtcagatctcgttacagatggttgtgag 240
           |||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||
Sbjct: 381 tgtagctgtcttcagacactacagaagagggagtcagatctagttacagatagttgtgag 440

                                                                       
Query: 241 ttttt-----atgtggttgctgggatttgaactccggacctacggaagaacagttgggtg 295
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 -----ccaccatgtggttgctgggatttgaactccggacctacggaagaacagttgggtg 495

                                                                       
Query: 296 ctcttacccactgagccgtctcaccagccctcagcttttcacccccacaacaaatatctg 355
           ||||||||||||||||| ||||||||||||||||||||||| |   | ||||||||||||
Sbjct: 496 ctcttacccactgagccatctcaccagccctcagcttttcatcttgataacaaatatctg 555

                                                                       
Query: 356 ctatagtaaagttataaaaatggttcatgttggcttctagtaattgaagttcagaagttt 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ctatagtaaagttataaaaatggttcatgttggcttctagtaattgaagttcagaagttt 615

                                                                       
Query: 416 atgtggcccatggctttggcacgccacagcaggagggcatagtaaagcagaagtgcttat 475
           ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 616 atgtggcccatggctttggcacgctgcagcaggagggcatagtaaagcagaagtgcttat 675

                                                   
Query: 476 ctcatggccaggaggcaaagagaaaaaggggaagaagtgc 515
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ctcatggccaggaggcaaagagaaaaaggggaagaagtgc 715


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space:   457025
Effective search space used:   457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)