Query= MSMg01no389_a16.b1 MSMg01no389_a16.b1 CHROMAT_FILE:
MSMg01no389_a16.b1 PHD_FILE: MSMg01no389_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:31 2005
(287 letters)
>mm_chr3_12019726_12020412
Length = 687
Score = 478 bits (247), Expect = e-139
Identities = 277/287 (96%)
Strand = Plus / Plus
Query: 1 tttaaagaactggtgcacttcccatttgaaaatcttgcaaaggtcttgctggagtattct 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 201 tttaaagaactggtgcacttcccatttgaaaatcttgccaaggtcttgctggagtcttct 260
Query: 61 gccaaggtagaaacatcctatcttctaagggctggtgatgcttgtgacattgaagttgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccaaggtagaaacatcctatcttctaagggctggtgatgcttgtgacattgaagttgag 320
Query: 121 ggcaagagtcatgtcagtgttattggtgatgatgagctgagtgcagttgatccattgcaa 180
|||||| |||||||||||||| ||||||||| ||| |||||||| |||||||||||||||
Sbjct: 321 ggcaagggtcatgtcagtgttcttggtgatgctgacctgagtgctgttgatccattgcaa 380
Query: 181 gtacttgcacttttgaccaactgcaagcactgagaatgctcttgtcagaattgaccatct 240
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 381 gtacttgcacttttgaccaactgcaagcactgaaaatgctcttggcagaattgaccatct 440
Query: 241 tggcaaccatcttcccttctttcgaccagatgagcattttgatggga 287
||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 tggcaaccatcttcccttctttctaccagatgagcattttgatggga 487
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no389_a16.g1 MSMg01no389_a16.g1 CHROMAT_FILE:
MSMg01no389_a16.g1 PHD_FILE: MSMg01no389_a16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:31 2005
(502 letters)
>mm_chr3_12172606_12173507
Length = 902
Score = 849 bits (439), Expect = 0.0
Identities = 487/503 (96%), Gaps = 2/503 (0%)
Strand = Plus / Minus
Query: 1 aacagatctacttatagagaataaagtaaggtaggattgtggatttttggcaacattatg 60
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 702 aacagatctacttatagagaataaagtaatgtaggattgtgtatttttggcaacattatg 643
Query: 61 ttctaaggtaaaatataaacagaagaaaaattaggcaggaaggaaagataaagtcaataa 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 ttctaaggtaaaatataaacagaagaaaaattaggcaggaaggaaagataaagtcaatat 583
Query: 121 aattctctggcagtgatctggagaccacagtgcaaagaggaaggagatccagtgttcaca 180
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 582 aattctctggctgtgatctggagaccacagtgcaaagaggaaggagattcagtgttcaca 523
Query: 181 gttattctgaacagtggcctctctttctatcaagcttttaaattttcaacta-gcagaat 239
|||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||
Sbjct: 522 gttattctgaacagtggcctttctttctatcaagcttttaaattttcaac-aggcagaat 464
Query: 240 ctgtgtgatgtccaatcatcgtggtgtgtaagagtggcaaactactgtgctttaatagat 299
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 463 ctgtgtgatgcccaatcatcgtggtgtgtaagagtgggaaactactgtgctttaatagat 404
Query: 300 acatgctcaatataaaagaatagtcacggaggctaagaaattttcttcaaaatttcgtgg 359
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 403 acatgctcaatataaaagaatagtcacggaggctaagtaattttcttcaaaatttcgtgg 344
Query: 360 gataaggtgataacactaagaatgatttacaaactgaaaaattaaacaatatgaaaataa 419
||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||
Sbjct: 343 gataaggtgataacactaagaatgatttacaaacttaaaatttaatcaatatgaaaataa 284
Query: 420 tactattagtttttacaagctggtaagattactatggtaacctaaaataataatattttt 479
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 283 tactattagttattacaagctggtatgattactatggtaacctaaaataataatattttt 224
Query: 480 aacacaacctgagaacataaggt 502
|||||||||||||||||||||||
Sbjct: 223 aacacaacctgagaacataaggt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space: 438864
Effective search space used: 438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
