BAC Information

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BAC

Clone NameMSMg01-389P11
Chromosome3 (Build37)
Map Location 105,766,083 - 105,766,198
singlet/doubletsinglet
Overlap geneWdr77
Upstream geneCttnbp2nl, 4930564D02Rik, 1700095B22Rik, Kcnd3, Ddx20, 6530418L21Rik, Rap1a, EG433637, Adora3, I830077J02Rik, Atp5f1
Downstream geneOvgp1, 1700027A23Rik, LOC100043591, Bclp2, LOC100043594, LOC670819, LOC100043129, Chia, Chi3l3, Chi3l4, EG624696, BC051070, 2010016I18Rik, Dennd2d, Cept1, Tmem77, LOC100043608, 4933421E11Rik, Cd53, Olfr266
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389P11.T7 (MSMg01no389_p11.b1)MSMg01-389P11.TJ (MSMg01no389_p11.g1)
ACCAG492094AG492095
length790736
length of high quality
(start - end)
125 (75 - 199)518 (79 - 596)
definitionCHROMAT_FILE: MSMg01no389_p11.b1 PHD_FILE: MSMg01no389_p11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:44 2005CHROMAT_FILE: MSMg01no389_p11.g1 PHD_FILE: MSMg01no389_p11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCATTATAATTTGCGGCGNTAAANGAANACTAATCATCACCAGGCGNGGA
ATTAAGGTCTTACGAAAACGTGGAAAGATTTCACTGATTGAGCCATCTCC
TGCCCAAGACTTTTGAATCTCACTCTTGAATGTTCACTTCTATAACATGT
CTGTCTGGGGCTTTCATCACTTTATTGTCCTTTCGGCTTTGCTTACGAGC
TGAATTTAGTTTGCTAGCAATTCTTTATGAATTTTGAGTCCATGACCATG
GGTACTAGAGTGAGACGAGGATCGAGGTTGACTTAGTCCTAAAGGCAGAA
CCCCTCTGGCTATTTTTTTTTTGCTGACTAAATGACCTCAGTGATTCCTT
CAGTCTCTATCTACCTGCTGATATTCATTCATCCATTGCATATATACTGT
CCCAAAGAACCTTACAGCTTGTCCATTTTCCCGTTGTTAACCCCAACATT
TATCTGCCTTCCTTCCCGCTTCCCCCTGCTCTTCCCTTCCCCTATTCTGT
CACTCCCACGTCCTTCATTCTCCCTCCTTCCCCCCCCATTCCCCCTCTGC
TTATTCTCTCCATTCTGTCTTCCCCCCCTCTTCCCCCCTCCCTCTTTCCA
CCTTCCCTTTTCTTTTCCCCTACCCCCCTTTCCCCCCATTTCTTCCCTCT
CCCTTTCCCTCTTTTCCCCTCCTCTCCCTCCTCATTACCCTTCTCCTCCC
CTCCCCCCTTCCTTCTTCTCCTTCCCCCTTTCTTCCCCGTCCATTCCTTC
TCTCCTACCCTTCCCCCCCCTTCCCCCCTATTTACTCCTN
NNNAACTATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACGCAGTTGAATCCTTCTCAAC
AGTCTGTTTTACGGGAACACTTCATTACCACCGTTCCCCAGCTGAAGAGT
TCTGAATTCACGCAGTTGAATCCTTCTCAACAGTCTGTTTTACGGGAACC
TTTATTACCATGACCCGCAGTTCTGGTTCTGGAATGAGGGATCTTCCTTG
CGCCGGAAATGGTAGTTTCCGTCCCGGGTTTTCTCGTCCCGGGTTTTCTC
GTCCCAGGTCTTCTCGTCCCGTTTCTCTGCACCAACTCTTACACGCGTTC
TCATCCCAGGATTTCTCGTCCCAGGTCTTCTCGTCCCAGGTCTTCTCGTC
CCAGGTCTTCTCGTCCCAGGTCTTCTCGTCCCGTCCCGGGTTTTCTTGTC
CCGTCCCGAGTTTTCGGCACCAACTCTTACCCGCGTTCTCGCAACCGGCC
AGGAAAGACGCAACAAACCGGAATCTTCTGCGGCAAAAGCTTTATTGCTT
ACATCTTCAGGAGCCAGAGAGCAAGAGAGCAAGAGAGAGAAAGAAAAAGA
ACCAGAAAGCCAGAGAGAGAAAAGCTTGAACCAGAGAGAGAAAACAGCAG
AACTGATATTATAATAGACTGGCATATCCCCGTCCTTTTTACGAGAATTA
TCCTCCGCCTAGGACGTATTACTCTCTGATTGGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_p11.b1 MSMg01no389_p11.b1 CHROMAT_FILE:
MSMg01no389_p11.b1 PHD_FILE: MSMg01no389_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:44 2005
         (125 letters)



>mm_chr3_105765878_105766402
          Length = 525

 Score =  217 bits (112), Expect = 2e-61
 Identities = 115/116 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   ttcactgattgagccatctcctgcccaagacttttgaatctcactcttgaatgttcactt 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ttcactgattgagccatctcctgcccaagacttttgaatctcactcttgaatgttcactt 265

                                                                   
Query: 66  ctataacatgtctgtctggggctttcatcactttattgtcctttcggctttgctta 121
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ctataaaatgtctgtctggggctttcatcactttattgtcctttcggctttgctta 321


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 125
Length of database: 525
Length adjustment: 8
Effective length of query: 117
Effective length of database: 517
Effective search space:    60489
Effective search space used:    60489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)