BAC Information

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BAC

Clone NameMSMg01-391E07
Chromosome3 (Build37)
Map Location 100,273,974 - 100,274,387
singlet/doubletsinglet
Overlap genenone
Upstream geneM6pr-ps, Spag17, LOC623045, Wdr3, Gdap2, LOC195514
Downstream gene4930431B09Rik, OTTMUSG00000007026, Man1a2, Vtcn1, Trim45, Ttf2, Igsf2, Ptgfrn, LOC668578, LOC668583, LOC669017, Cd2, LOC100043490, Igsf3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391E07.T7 (MSMg01no391_e07.b1)MSMg01-391E07.TJ (MSMg01no391_e07.g1)
ACCAG493082AG493083
length767790
length of high quality
(start - end)
244 (69 - 312)414 (80 - 493)
definitionCHROMAT_FILE: MSMg01no391_e07.b1 PHD_FILE: MSMg01no391_e07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:25 2005CHROMAT_FILE: MSMg01no391_e07.g1 PHD_FILE: MSMg01no391_e07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTGCGGACGCTATACGAANACTATATTCCCAAAATCCGCGGAATTCTTT
GTTCTGCCCCGAACCTCATTTTTTTTTAAATTAGGTATTTTCCTCGTTTA
CATTTCCAATGCTATCCCAAAAGTCCCCCATACCCACTCCCCCTTTTTGG
CCCTGGCGTTCCCCTGTACTGGGGCATATAAAATTTGCAAGTCCAGTGGG
CCTCTCTTTCCAGTGATGACCGACTAGGCCATCTTTTGATACATATGCAG
CTAGAGACAAGAGCTCCGGGGTACTGGCTAGTTCATATTGTTGTTCCACC
TATAGGGTTGCATTTCTCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTC
CATTGGGCGCCATGTGACCCATCCAATAGCTGACTGTGAGCATCCACTTC
TGTGTCCGCCACCCCCTGGCATAGTCTCACAAGGGACAGCTATATCTGGT
CCCTTTCAGCACAATCTTGCTAGTGTATGCAATGGTGTCCGCGTTTGGAC
ACCGATCATGGGACGGATCCCTCGGTACTGGCAATCTCCACATGGCCTCT
CACTTTTGTCTCCACCCCTATTTCTTGCCTTCCGTACCCCCCTTCTTGGC
CGGTCCTTTTCCCCTTCTTCACACCTCGCCCCCTGCCCACCTCCTCTGCT
TCTTTTCTTCTTCTCTACCCATTACCTTTCTCTCTCCCTCTTCCTCTTCT
CCCCCTTCCCCAATTTTTCTCCGTACCCCCACATCTTCCTCTCTCTCATA
TCTCACCTCTCTTCCCN
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGGCTTTGGGTTTTGTGAG
GAGACCTGAGCTGTTTCAGGGTTAAAAGGAAGGTAATGAAAAACGAACCC
AACTTTGAAAACTGCTGGTCATCCATGACCTTAAGAGGCTACAGTTGTAA
TCAAAAGAGAATGTGTTTGCACAGAACAAGGTTTGCCCAATCAAAGCTTT
TGAAGTGTGTTGGAGCCTCCCTGAATGTAAGCACTTGCTAATAGAAGCGG
AAAGCAGGACTGCTTCAGCTGTGATTTTTTTTGGGGACAAGTAAGACACT
GGAAAATTCCTGGCATCATCTTGGAGTTCTTACTACTTTATATACATACA
TTTTTCCAGTCTGGCCATAATTGTCTTCTGAGGATGGAGAGAGGAGACAC
AGGAGTTGCAAACCACCACTGGATGATGGCCCCACCTTGATCGGCCCCTT
TTAGTCTGCCCCGCTGCCTCGGGGTAAAGAGCTGATGTGTGTTCTTAAAC
CTTCAAAATGCCATTTGCCGTGCACCAACCCCTCATTTTTTACAACCCAG
CCCCCGGTTTCGCCCCTCCTCTTCTTCCTTCTCTTTCCCCTGCCCTGTCT
GCCCTCCTCCCCCTTTCCCCCCAATTTCTAACCCCTCCTTCTTTCCCACA
GCCCCCACCCACCCTTCCTTTTCCCCCCTCCTTTCGCCAACCCTCTCCCG
CCCCTATCGGCACTTTCCTCTTCTCTCTCCCTCCTCATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_e07.g1 MSMg01no391_e07.g1 CHROMAT_FILE:
MSMg01no391_e07.g1 PHD_FILE: MSMg01no391_e07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:25 2005
         (414 letters)



>mm_chr3_100273774_100274587
          Length = 814

 Score =  719 bits (372), Expect = 0.0
 Identities = 403/420 (95%), Gaps = 12/420 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   attggctttgggttttgtgaggagacctgagctgtttcagggttaaaaggaaggtaatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 attggctttgggttttgtgaggagacctgagctgtttcagggttaaaaggaaggtaatga 555

                                                                       
Query: 61  aaaacgaacccaactttgaaaactgctggtcatccatgaccttaagaggctacagttgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 aaaacgaacccaactttgaaaactgctggtcatccatgaccttaagaggctacagttgta 495

                                                                       
Query: 121 atcaaaagagaatgtgtttgcacagaacaaggtttgcccaatcaaagcttttgaagtgtg 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 494 atcaaaagagaatgtgtttgcacagaactaggtttgcccaatcaaagcttttgaagtgtg 435

                                                                       
Query: 181 ttggagcctccctgaatgtaagcacttgctaatagaagcggaaagcaggactgcttcagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ttggagcctccctgaatgtaagcacttgctaatagaagcggaaagcaggactgcttcagc 375

                                                                       
Query: 241 tgtga------ttttttttggggacaagtaagacactggaaaattcctggcatcatcttg 294
           |||||            |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 374 tgtgacaaggc------ttggggacaagtaagacactggaaaatttctggcatcatcttg 321

                                                                       
Query: 295 gagttcttactactttatatacatacatttttccagtctggccataattgtcttctgagg 354
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gagttcttactgctttatatacatacatttttccagtctggccataattgtcttctgagg 261

                                                                       
Query: 355 atggagagaggagacacaggagttgcaaaccaccactggatgatggccccaccttgatcg 414
           ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 260 atggagagaggagacacaggagttgtaaaccaccactggatgacggccccaccttgatcg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space:   326025
Effective search space used:   326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)