BAC Information

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BAC

Clone NameMSMg01-391G02
Chromosome3 (Build37)
Map Location 59,170,009 - 59,170,554
singlet/doubletsinglet
Overlap genenone
Upstream geneTsc22d2, D3Ucla1, Eif2a, 2810407C02Rik, 4932431H17Rik, LOC666680, LOC100040251, Siah2, LOC100040293, Clrn1, LOC100040416, Gpr171, P2ry14, Gpr87, P2ry13, P2ry12, Igsf10, EG666751
Downstream geneEG666756, EG229330, EG435732, LOC433597, LOC433598, LOC100040407, LOC669780, EG666803, C130079G13Rik, LOC676914, Aadacl2, Aadac, Sucnr1, LOC669823
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391G02.T7 (MSMg01no391_g02.b1)MSMg01-391G02.TJ (MSMg01no391_g02.g1)
ACCAG493167AG493168
length735734
length of high quality
(start - end)
551 (59 - 609)499 (85 - 583)
definitionCHROMAT_FILE: MSMg01no391_g02.b1 PHD_FILE: MSMg01no391_g02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:34 2005CHROMAT_FILE: MSMg01no391_g02.g1 PHD_FILE: MSMg01no391_g02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGCCGCTAAACGACTACTATATTCAGAGGATCCGCGGAATTCAATGTCC
TGAAAAAAATGGACAGAAATGTATATGGAGGAATGGTTATGGTTCAGTCG
CTTTGGGCCCAATATTTGGGTTTCATATTCTTAGAGTCTCAGTTCTATTA
AATCACAAATAAACAGACAGAAAAAATGTCTCTTCATTTCCTCACACCTT
CCTGTTTTCACTGGAGTCTCTGTAAGTGACAGTATTTAGTGACAGTATGG
TGCCTCAATTCTCCATTTCCACAGTAACACAATGAAGTTACTCTGCAACA
CTGTCACCTTTTCTGTTTCTTCAGAGTATTTTAAGACTTGACTTAGGTTT
TCCAGTTTCTGGGAACTACAACCTGCATTATTTGGACAAGTTGTCTTTCT
CATAAGAACTGAAGAGCTCAAATTAGGGTTTTGGAAAATCCTCTTTAAAA
ATCAGGAGGGGGTAGCAGTATACTGGCTTTCAAACCTGAAAAGAAAACAG
GAACCCTGAGTGTTGACAAACCCGGGAAAAAGGGTTTTATGAATTCAGCA
CCATTGAAATGAACATTTTCACAGTGACATTATTGAAAGGGACAAAATTT
AAGGAACCTAGTAGCAGATTTTCTCTAACATAAGTTGAGACTGTACATCA
CTAATACAGTACATCAGAAGAACTCTTCCTTGGCCCTTCTCAGCGCGAGA
GAAGATTCCAGGGAATGAATCTCAAGTCTAGAACN
NNNNTTCCCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAAACCTGAATAACA
GCTTCAGTGCAGTAGCTGGATATAAAATTAACTCAAGCAAGTCAATGCCC
TTTCTCTACACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAAC
ACCCTTAACAATAGTCACAAGTACTATAAAATACCTTGGTGTGACTCTAA
CAAAGGAAGTGAAACATCTGTATGATAAGAACTTCAAGTCTCTGAAGAAA
GAAATCAAAGAAGATCTCAGAAGATTGAAAGATCTCCCATGCTCATGGAT
TGGCTGAATCAATATAGTAAAAATGGCTATCATGCAAAAAGCAATCTACA
GATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACGAATTA
GAAAGGGCAATTTGCAAATTCATCTGGAATAACAAAAAACCTAGGAGAGC
AAAAACTCCTCTCAATAATAAAAGAATCTCTGGTGGAATCTCAATGCCTT
ACCTAAAACTGTACTGCAGAGCAATTGTGATTAATACTGCATGGCACTGA
TATGGCTACACATAAGGAGACCCATGCAATAGAAATGAAGACCCAGACGT
GAACCCCCCCCCCTATGGTCCCTTGCCCCTTTGACCCGCCAGCCCAAACC
CCCTATTGCGAAAACAGAAGGCCCCTTTACAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_g02.b1 MSMg01no391_g02.b1 CHROMAT_FILE:
MSMg01no391_g02.b1 PHD_FILE: MSMg01no391_g02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:34 2005
         (551 letters)



>mm_chr3_59169809_59170754
          Length = 946

 Score = 1009 bits (522), Expect = 0.0
 Identities = 542/552 (98%), Gaps = 7/552 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggacagaaatgtatatggaggaatggttatggttcagtcgctttgggcccaatatttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atggacagaaatgtatatggaggaatggttatggttcagtcgctttgggcccaatatttg 260

                                                                       
Query: 61  ggtttcatattcttagagtctcagttctattaaatcacaaataaacagacagaaaaaa-t 119
           |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 261 ggtttcatattcttagagtctcagttctattaaatcacaaataaacagaccgaaaaaaat 320

                                                                       
Query: 120 gtctcttcatttcctcacaccttcctgttttcactggagtctctgtaagtgacagtattt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtctcttcatttcctcacaccttcctgttttcactggagtctctgtaagtgacagtattt 380

                                                                       
Query: 180 agtgacagtatggtgcctcaattctccatttccacagtaacacaatgaagttactctgca 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtgacagtatggtgcctcaattctccatttccacagtaacacaatgaagttactctgca 440

                                                                       
Query: 240 acactgtcaccttttctgtttcttcagagtattttaagacttgacttaggttttccagtt 299
           ||||      ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acac------cttttctgtttcttcagagtattttaagacttgacttaggttttccagtt 494

                                                                       
Query: 300 tctgggaactacaacctgcattatttggacaagttgtctttctcataagaactgaagagc 359
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tctgagaactacaacctgcattatttggacaagttgtctttctcataagaactgaagagc 554

                                                                       
Query: 360 tcaaattagggttttggaaaatcctctttaaaaatcaggagggggtagcagtatactggc 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tcaaattagggttttggaaaatcctctttaaaaatcaggagggggtagcagtatactggc 614

                                                                       
Query: 420 tttcaaacctgaaaagaaaacaggaaccctgagtgttgacaaacccgggaaaaagggttt 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 615 tttcaaacctgaaaagaaaacaggaaccctgagtgttgacaaacccgggaagaagggttt 674

                                                                       
Query: 480 tatgaattcagcaccattgaaatgaacattttcacagtgacattattgaaagggacaaaa 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 tatgaattcagcaccattgaaatgaacattttcacagtgacattattgaaagggacaaaa 734

                       
Query: 540 tttaaggaacct 551
           ||||||||||||
Sbjct: 735 tttaaggaacct 746


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 946
Length adjustment: 10
Effective length of query: 541
Effective length of database: 936
Effective search space:   506376
Effective search space used:   506376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)