BAC Information

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BAC

Clone NameMSMg01-393D19
Chromosome3 (Build37)
Map Location 129,638,638 - 129,638,948
singlet/doubletsinglet
Overlap geneCcdc109b
Upstream geneEG668831, Pitx2, Enpep, LOC100043415, LOC435755, LOC668840, Elovl6, LOC100043758, Egf, Gm421, Rrh, Nola1, Cfi, Pla2g12a, Casp6
Downstream geneSec24b, EG668844, EG668845, Col25a1, Agxt2l1, 2310008M10Rik, Rpl34, LOC546811, LOC545568
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-393D19.T7 (MSMg01no393_d19.b1)MSMg01-393D19.TJ (MSMg01no393_d19.g1)
ACCAG494582AG494583
length765752
length of high quality
(start - end)
---311 (256 - 566)
definitionCHROMAT_FILE: MSMg01no393_d19.b1 PHD_FILE: MSMg01no393_d19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:06 2005CHROMAT_FILE: MSMg01no393_d19.g1 PHD_FILE: MSMg01no393_d19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCT
CGGGCTTCTGAGGATGACAGTGGAAAATTATGTCTCCTTCCCCTGCACTC
CACAAAACACAAAGACACCTTTTGTCTCCTCCTAGACTTGTACGCAACAT
TACAACAACCCTGCACCTCAAACAGCAAAGGCTGACAAGGAGCTCGAGTG
TCCGACGGTCACGCTACTCTAGTGCTAAATATCTTTTTTGCGGATTTGCA
CTTGGCATATATGCTCCTATAGCAGGTACCTGAAGCCTCTCCCCCAGTAT
AAAGGAGCAAACCTGAGGCCGTGCATGGAGGCACATGCCTTTAATCCTCA
CACTCGTGAAGGAATATCCTTGCAGAATATCTGACCTCCAGGTCAGCCTG
TACTATGAAGTGAGTTCCTAGACAGTCATGATTACACGAATAACTCCTGT
CTGATCATTTGGTCATGAGAGAGAGAGAGAGAGAGAGAGATACTTTCATA
GATTCAGAGAGTGAGAGAGCANAATCCGCTAACTTATGTTAGCCATTCGA
ACGCGGAATTACTAGGAAAGCTCATGCCACTAAGTGCCTCCAACAGAACT
TTACAGAGGTTTCATACCAGCAATTTTAAAAGACCCCTGGAAGCTCTTTG
CTGAATGCCTACTGAGGATTCCAACCATGGAAAGGAAGAGCATAATGTGA
TAAGGAATGTGTAGAAAATTTTTTTTTTCTGGCGCCATTAAAACGGAAGA
ATCTGGAACTAAAAC
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCTTTGTAGATCAGGCTGTCATCTAACTCAAAGA
CCCATCTGCCCCTGATTGTCAAGTGCTAGGATTCAAACCACGCACCACTA
TGCCTGGCTTACACTTCTTAGAATGAATATACTTCAATTAATAAGCACAC
GTAGTAGGTTTCCATGTTTGTATCATGAATGTTATAGTGCTATTACTTTT
AGGGAAAGAAAATGGAAATTGAGAAAGACACACACATTGCACAAATAGGA
ACTTTCACACAAATGGCTCTTTAGAATTGCTCGATGATTCAGACACTTTT
GCCTGTACATACATCCAAGAAAGAACAGCAGACTCCAGGCCAACACCATT
CATAATTAGTGGCTGAGTGTGTGTACTGCCTGACCTTCTAAAGCATCGCT
AGCTTTTCCTGAGGTTGGCTCTGTGGCGGAGCCTGTGCAGAGCTCATGGA
CTTGAAGTATAAGGAAAAGAAGCGTCCTCCCTCCCATCAGCCCGACGGTG
CGCCTGCGCGCTTGCGCGTGTGCACATGCACGGACCCTGGCTTTCCCTAA
TGCTCCTTTAGACTTACTTACGATTATGCTACGAGCGGCGGGAGTTTTGC
TTGATCCTATGTCTATGCGTCAAAGGAAGCCCGATTATTATTCAGATTCC
TTCGAACCCGTAAACCCTGGACGATTGGTCGTAAGCTGCTATGCGCTACT
AN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no393_d19.g1 MSMg01no393_d19.g1 CHROMAT_FILE:
MSMg01no393_d19.g1 PHD_FILE: MSMg01no393_d19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:06 2005
         (311 letters)



>mm_chr3_129638438_129639148
          Length = 711

 Score =  493 bits (255), Expect = e-144
 Identities = 297/311 (95%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagaaaatggaaattgagaaagacacacacattgcacaaataggaactttcacacaaatg 60
           |||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||
Sbjct: 201 aagaaaatggaaattgagaaagacacacacattgcagagataggaactttcagacaaatg 260

                                                                       
Query: 61  gctctttagaattgctcgatgattcagacacttttgcctgtacatacatccaagaaagaa 120
           |||||||| ||||||||||||||||| |||||| |||||||||||||||||||| |||||
Sbjct: 261 gctctttaaaattgctcgatgattcaaacacttctgcctgtacatacatccaaggaagaa 320

                                                                       
Query: 121 cagcagactccaggccaacaccattcataattagtggctgagtgtgtgtactgcctgacc 180
           ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 cagcaaactccaggccaacaccattcataattagtggctgagcgtgtgtactgcctgacc 380

                                                                       
Query: 181 ttctaaagcatcgctagcttttcctgaggttggctctgtggcggagcctgtgcagagctc 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctaaaggatcgctagcttttcctgaggttggctctgtggcggagcctgtgcagagctc 440

                                                                       
Query: 241 atggacttgaagtataaggaaaagaagcgtcctccctcccatcagcccgacggtgcgcct 300
           |||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||
Sbjct: 441 atggacttgaagtataaggaaaagaagcgtcctccctcctgtcagcccgacagtgcgcct 500

                      
Query: 301 gcgcgcttgcg 311
           ||||| |||||
Sbjct: 501 gcgcggttgcg 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)