BAC Information

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BAC

Clone NameMSMg01-393P21
Chromosome3 (Build37)
Map Location 18,736,993 - 18,737,422
singlet/doubletsinglet
Overlap genenone
Upstream geneCypt12, LOC545508, Bhlhb5, Cyp7b1, LOC622921, LOC100040153
Downstream geneArmc1, Mtfr1, Pde7a, Dnajc5b, EG620290, Trim55, Crh, LOC665002
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-393P21.T7 (MSMg01no393_p21.b1)MSMg01-393P21.TJ (MSMg01no393_p21.g1)
ACCAG495154AG495155
length772847
length of high quality
(start - end)		436 (39 - 474)60 (73 - 132)
definitionCHROMAT_FILE: MSMg01no393_p21.b1 PHD_FILE: MSMg01no393_p21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:12 2005CHROMAT_FILE: MSMg01no393_p21.g1 PHD_FILE: MSMg01no393_p21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAGGATCCGCGGAATTC
ACCATAGCTTAAGCATAAGATATTGCTAAAACTTACACAGGGAACAGTGA
TGTGTGGGACCTTCACAGTGCCAACAGCTTGTTCTCTGATCTAGTCAGAG
CAACTTCCAGTCCTGAAAGTGCCCTGTGCAAGTGCATTTTCAATTCTTAT
GCCACATTTTGACTATATGTTTTCTCTTAGTCGAGGTTTCTATTCCCGCA
CAAACCCCATAACCAAGAAGCAAGATGTAGAGGAAAGAATTTATTCAGCT
TATATTTCCACATTCCTGTTTATCATCAAAGGAAGTCAGGAATGGAACTC
AAGCAGGTCAGGAAGCAAAACCTGATGTAGAGACCATTGAGGGATGTTCC
TTACTGGCTTGTATTTCCTGGCTTGCTCAGCCTGCTCTCTTATAGAACCC
AGTACTACCAGCCCAGGGAGGGCACCACCCACAATAGGCCCTCTCACCCT
TGATCAATAATTAAGAAAATGCTTTATAGCTGGATCTCATGGAGGGATTT
CCTCATAGGGAGGCTCCTTCTCTCGTAAAACCCAAGCTTGTGTCAGGTGA
ACCAACAAAACCCGCCCGAAAATCCCCCCTTGGCAACCTGGCCCATAAAC
CCTCCCTATTAACCCCCCCCCTCTACTTTTTATTCTTCCCTAAAACAAAA
AAACTTTAAATGCCCGAGTTTTTTATATAAAAATTAAACCCCTCCCAAAA
AAAAATTTCTCTAATTTAAAAG

CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCAGGGCCAAGAAGTGGGAGTGGGTGGGTAGGG
GAACAGGGCAGGGGGAGGGTATAGGAGACTTTCTCGTCCCCTTTCACCTG
CTCTTTCCGACCCATCCCTTTCTTCTCCCCCCGTTTTGCCTCTTTCTTTC
CCCTTCCCTTGTGCTCTTTCTTCCTCCCACCTTCCTCCTTTCCCCCGTCC
CTGCCGCCTCACCCCCGCCGATTGCCTACTTTCCTCCTCTCCCCTTCCCC
CTCTATTTCCTCCCCTTTTTTTTTTCTCTCTCCTCTTTTTCCCTCTCCTT
TTCCCTCCTTCTTCTCCCCCCTCTTTTCCCTTCCCCTTCCCTTCCTCTCT
CTCTCTTTCTTCCCCTCCTCCCTCCCTTTCCCTTCCTTTCCTCTCCTTCC
CCCTCTCCTCCCCCCTTTCCTCTCCTCTTCTCTCATTTTCTCTCTTCTTC
CCTCTCTCTTTTTTTCTCTCTCGTTTTTCTCCTCCTCTCTCTTTTTCCCT
TTCCCTCCTCTCTTCTTTCCTTTTTCTTCCCTTTCCTCCTCCTCTTCTCC
TTCCTCTCTCTTTCCTCTCTTCCTCTCTTTCTTTCTCTCTTTTGTCCTCC
TTTCTTTTCTCTTCCTCCTCTTCCTCCTCTCCTTTCTCTCTTTTTTCTTC
TCCCTTCCCCCCTCTCTCCTCTTTTTCTCCTTCTTTCCTTCTTTTCCCCT
TCTTTTCTTCTCCTCCCTCTTTTTTTCTTTCTCTTCTTCCTCTCCGCTTC
TGCCTCCCCTCCTTCTTTCCTTTCTCTTTTTTTCTTTTTCTTCCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no393_p21.b1 MSMg01no393_p21.b1 CHROMAT_FILE:
MSMg01no393_p21.b1 PHD_FILE: MSMg01no393_p21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:12 2005
         (436 letters)



>mm_chr3_18736787_18737622
          Length = 836

 Score =  777 bits (402), Expect = 0.0
 Identities = 423/430 (98%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcaccatagcttaagcataagatattgctaaaacttacacagggaacagtgatgtg 66
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcaccatagcctaagcataagatattgctaaaacttacacagggaacagtgatgtg 266

                                                                       
Query: 67  tgggaccttcacagtgccaacagcttgttctctgatctagtcagagcaacttccagtcct 126
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tggggccttcacagtgccaacagcttgttctctgatctagtcagagcaacttccagtcct 326

                                                                       
Query: 127 gaaagtgccctgtgcaagtgcattttcaattcttatgccacattttgactatatgttttc 186
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 327 gaaagtgccctgtgcaagtgcatttttaattcttatgccacattttgactatatgttttc 386

                                                                       
Query: 187 tcttagtcgaggtttctattcccgcacaaaccccataaccaagaagcaagatgtagagga 246
           |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 387 tcttagtcgaggtttctattcccgcacaaaccccataaccaataagcaagatgtggagga 446

                                                                       
Query: 247 aagaatttattcagcttatatttccacattcctgtttatcatcaaaggaagtcaggaatg 306
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 aaggatttattcagcttatatttccacattcctgtttatcatcaaaggaagtcaggaatg 506

                                                                       
Query: 307 gaactcaagcaggtcaggaagcaaaacctgatgtagagaccattgagggatgttccttac 366
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 507 gaactcaagcaggtcaggaagcaaagcctgatgtagagaccattgagggatgttccttac 566

                                                                       
Query: 367 tggcttgtatttcctggcttgctcagcctgctctcttatagaacccagtactaccagccc 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tggcttgtatttcctggcttgctcagcctgctctcttatagaacccagtactaccagccc 626

                     
Query: 427 agggagggca 436
           ||||||||||
Sbjct: 627 agggagggca 636


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space:   353129
Effective search space used:   353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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