BAC Information

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BAC

Clone NameMSMg01-394F20
Chromosome3 (Build37)
Map Location 52,208,257 - 52,208,665
singlet/doubletsinglet
Overlap genenone
Upstream geneNdufc1, Narg1, Rab33b, Setd7, LOC100039684, Mgst2, Maml3, LOC433587, LOC100039788, LOC671890, Olfr1398-ps1, Foxo1
Downstream geneLOC100039762, LOC100039832, Cog6, Lhfp, LOC100039808, LOC666413
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-394F20.T7 (MSMg01no394_f20.b1)MSMg01-394F20.TJ (MSMg01no394_f20.g1)
ACCAG495438AG495439
length831795
length of high quality
(start - end)
346 (70 - 415)409 (75 - 483)
definitionCHROMAT_FILE: MSMg01no394_f20.b1 PHD_FILE: MSMg01no394_f20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:43 2005CHROMAT_FILE: MSMg01no394_f20.g1 PHD_FILE: MSMg01no394_f20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCCTATAATTTGCGTCCGCTATACGACTCCTATATTCAGAGGATCCGCG
GAATTCAGGGATGTTCTAACTGCATGTATTTGGGTCCAAGTTCTCTCGCC
CTGAGTAAGAGCCTGGCTGGGACTACAGATAGGATGATTTACCTAAAGTT
CGAGGATCTGCTTCCAAAGGGCTCACACGTAGCTGGCAAGTTGCTGTTGG
CTGGCGGCAGGAGGCCTTAGGTTCTCGGCTCCATAGCACTGCTTGGGCAT
TCTCACGACACGGTACCTAGTTTTCTCCAGAGTTGAGTGACTCTTGAAAG
CGAGATAGCAGACACACTGTCTCCTATGTGCTGGCCTCAGGGGTCATACT
GTCATTGTGCAATGTCCACTTCTTTGCACCGGTCACTCTTCCTTAACGTG
GGAAGGAAATACACAACGCTGCGCGCACTGAGAGGCAAGTTTTAGCTCAT
CTCATAGACAAGCTACTATATCTACCTCTTGGATTCCGCCTCCCTTTGCG
GCCATTTGACCTGTACCAAATGGCTCTGCCCTTATGCCCTGCACCCTCCC
CACACACACCCCCCCTCATTCTTCATGTTCTTCGGCATCCTTTTTGGTCC
CCCCCTTTTAACTCAAAGTTCCACCTCCCCCCCTTTCCCCCTCTATCCCC
ACCTCTCCTACTTTCTCCCTTCTTCCTTTCTCTCTTCCCTTTCCCACCCA
TATCCCCCTCCCTCTTTCTCCCTTTCTTTCTTTTTCCGCCCGCCTCTTCT
CTTTCTCTTTTTCCTCACTTCTTTTTTTCATCTCCCCCTCACTTATACCT
CTTTCTCTTACACTTCTTCCTTTATGTCCTN
NCCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTTCTGAAATTGCCCTGGCTTTCTTT
TTTTCTCAGCCCCTTGTGAGAACACAGGAAACCCTGCTTCCCCAATCCTG
AAATATCTGCCTCAGGAAGGAAAGGACATTGTCTTTCCAGGGCCGCTCGC
TTGTGAACTGGCCCCATGGCCTTCTTTGTAAATACAAGACAGAAGCAAAC
CAATTTGGACATTCCTTGCAAACAGCAAGTTTGAAATATAATAAGCAAGT
CGACGTAAGGGCAGGGCAAGGGGACACGAAGCCAATACAAAATGTATAGA
CTGTAGGCTACAAGCAGCAGAGGTGTTTTGTTCTTATTTGGTTTACTGGT
TGGAGCAGGGTGCTTATTCAAGGCAGTAATCATTCAAAATTCTTTTCCTA
TTCCAGAAATCATTTATCAATTTACCTTTGACAAGATCCAAATAAAATTG
ATTTCTATGCTTTATAGAAAGCAGTCCAGAGGTCAGAGAGTTGCCTCATG
AATTAAAACTCCTGCTTGGGCCCCCGATAAAAAGGCTTCACCGTTCAACA
ACCTTTTACAGGTCTCCCATACTTCTCTGCATTCTATTCTCCCATACTAT
TTTGCGATTCCTACTCTTTTTTTTGTGAAGTATAATACCTCTCTTTTTTG
GCGGCGCCCCATCCATAAATCATAAAATTTATATACTTCTTCCCCTTTTT
CCTTTCCCCCACACTCCCTCATTCTCCCTCATCCTTTTTTCTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no394_f20.g1 MSMg01no394_f20.g1 CHROMAT_FILE:
MSMg01no394_f20.g1 PHD_FILE: MSMg01no394_f20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:43 2005
         (409 letters)



>mm_chr3_52208057_52208865
          Length = 809

 Score =  768 bits (397), Expect = 0.0
 Identities = 406/409 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttctgaaattgccctggctttctttttttctcagccccttgtgagaacacaggaaaccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 cttctgaaattgccctggctttctttttttctcagccccttgtgagaacacaggaaaccc 550

                                                                       
Query: 61  tgcttccccaatcctgaaatatctgcctcaggaaggaaaggacattgtctttccagggcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 tgcttccccaatcctgaaatatctgcctcaggaaggaaaggacattgtctttccagggcc 490

                                                                       
Query: 121 gctcgcttgtgaactggccccatggccttctttgtaaatacaagacagaagcaaaccaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 gctcgcttgtgaactggccccatggccttctttgtaaatacaagacagaagcaaaccaat 430

                                                                       
Query: 181 ttggacattccttgcaaacagcaagtttgaaatataataagcaagtcgacgtaagggcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 429 ttggacattccttgcaaacagcaagtttgaaatataataagcaagtcaacgtaagggcag 370

                                                                       
Query: 241 ggcaaggggacacgaagccaatacaaaatgtatagactgtaggctacaagcagcagaggt 300
           |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 369 ggcaaggggacacgaaaccaatacaaaatgtagagactgtaggctacaagcagcagaggt 310

                                                                       
Query: 301 gttttgttcttatttggtttactggttggagcagggtgcttattcaaggcagtaatcatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gttttgttcttatttggtttactggttggagcagggtgcttattcaaggcagtaatcatt 250

                                                            
Query: 361 caaaattcttttcctattccagaaatcatttatcaatttacctttgaca 409
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 caaaattcttttcctattccagaaatcatttatcaatttacctttgaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space:   320000
Effective search space used:   320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)