BAC Information

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BAC

Clone NameMSMg01-396D01
Chromosome3 (Build37)
Map Location 148,972,854 - 148,973,181
singlet/doubletsinglet
Overlap geneEG381483
Upstream geneLOC100040354, Lphn2, LOC100040368, LOC668893
Downstream geneLOC100040620, LOC100040633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396D01.T7 (MSMg01no396_d01.b1)MSMg01-396D01.TJ (MSMg01no396_d01.g1)
ACCAG496828AG496829
length733767
length of high quality
(start - end)
328 (58 - 385)389 (66 - 454)
definitionCHROMAT_FILE: MSMg01no396_d01.b1 PHD_FILE: MSMg01no396_d01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:16 2005CHROMAT_FILE: MSMg01no396_d01.g1 PHD_FILE: MSMg01no396_d01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGCTGCCGTTATACGACTCACTATATTTCCAGGATCCGCGGAATTCCAAT
TCTGTACCTCTTTCTGTTCCTTATAACAATGGCACCTCCCCCGTCACTCT
TTCTGGTCTCCAGCAACTACTGTTCACCTTTTCTTCCATGATGAGAAGAC
TTTTTTGCTGGTTTGTGTTTCGTTTGGGGGTATTTTATAGGAAGACAGTT
TGCTGCTACTGTTGTTTATTTCTGCTTGAGAAGGATCTCATTCTATGGCC
CAGGCTGTCCTGGAATTTGACACATAGGCCACACTGCCCTCAAATGCTTG
GGCTCCTACCTCAGGTGCCCAAGTGCTTAGGTAACTAAGGCAGGAGCCTC
GTGAGCTGTAACTACTTGTAAGTTACTGTTCATGCATGAGAACAAGGTCA
TATTGACAACTTAAAATTTTAATATGATCAGATAAGTTTTAGTTTTCCTT
GTATGGGTCAAGTTTTGCATTATTATCACAAGATTGTCCTCCTCTCCCCA
TTTAAATGTTAAAGAGCTAATTTGCATATTTTGGCACTTTTGATAGTCCA
CATCGTTATGGTCATGTCACCTTCTTTTCTAAGAGTTATTCCTTTGTGCA
GGTCTTATGCTTTTATTATGTCGCCTGTTGTCTACTTGTAATCGTGATAG
ATTAAACCCTTATTGTTTTACCCCCTCGCCTGCTGTTTCTTTTATATTCT
CTCCCCTTTGATTTCTTTTTGTCGGTTTAGTTT
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCACCCAAGGAATACAGAATGACTGAGAAGCACCT
GAAAAAATGTTCAGCATCCTTAATCATCAGGGAAATGCAAATCAAAACAA
CCCTGAGATTCCACCTCACACCAGTCAGAATAACTAAGATCAAAAATTCA
GGTGACAGCAGATGCTGGTGAGGATATGGATAAAGGGTAACACTCCTCCA
TTGCTTGTGGGATTGCAAGCTTGTACAAACACCCTGGAAGTCAGTCTGGC
AGTTCCTCAGAAAATTGGACGTAGTACTACCGGAGGATCCAGCAATACCT
CTCCTGGGCATATATCCAGAAGATGTTCCAACTGGTAATAAGGACACATG
CTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAG
AACCTAGATGTCCCTCATCAGAGGACTAGATACAAAATAACGTGTTACAT
CTACACAACGGAGCACTAATCAGCTATTAAAAACTATGAACTTATGATAC
TCTTCGCACAATTGCCTGTTTCCTGGCTTTATATCATCCCCCAGCTTTGT
GAATCTTCTTCCTAATATTAACTCCTTATGCATTGCCTTTCCTTGTTTTA
CTGGCTTTTTATTCCCTTCAATCTTTTTTTACACCCTTTTAACTTCCATT
TTGGTATAATCCCTTAACATAATATTTTTGTACAAAAAGTAATTACTTCT
TTGCACGTGTTTATATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_d01.b1 MSMg01no396_d01.b1 CHROMAT_FILE:
MSMg01no396_d01.b1 PHD_FILE: MSMg01no396_d01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:16 2005
         (328 letters)



>mm_chr3_148972653_148973381
          Length = 729

 Score =  596 bits (308), Expect = e-175
 Identities = 323/328 (98%), Gaps = 1/328 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   tctttctgttccttataacaatggcacctcccccgtcactctttctggtctccagcaact 61
           ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 202 tctttctgttccttataacaacggcacctcccccttcactctttctggtctccagcaact 261

                                                                       
Query: 62  actgttcaccttttcttccatgatgagaagac-ttttttgctggtttgtgtttcgtttgg 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 262 actgttcaccttttcttccatgatgagaagactttttttgctggtttgtgttttgtttgg 321

                                                                       
Query: 121 gggtattttataggaagacagtttgctgctactgttgtttatttctgcttgagaaggatc 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 322 gggtattttataggaagacagtttgctgctactgttgtttatttccgcttgagaaggatc 381

                                                                       
Query: 181 tcattctatggcccaggctgtcctggaatttgacacataggccacactgccctcaaatgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tcattctatggcccaggctgtcctggaatttgacacataggccacactgccctcaaatgc 441

                                                                       
Query: 241 ttgggctcctacctcaggtgcccaagtgcttaggtaactaaggcaggagcctcgtgagct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ttgggctcctacctcaggtgcccaagtgcttaggtaactaaggcaggagcctcgtgagct 501

                                       
Query: 301 gtaactacttgtaagttactgttcatgc 328
           ||||||||||||||||||||||||||||
Sbjct: 502 gtaactacttgtaagttactgttcatgc 529


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 729
Length adjustment: 9
Effective length of query: 319
Effective length of database: 720
Effective search space:   229680
Effective search space used:   229680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)