BAC Information

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BAC

Clone NameMSMg01-396E08
Chromosome3 (Build37)
Map Location 10,888,779 - 10,889,313
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC621504, Fabp5, LOC100041480, Pmp2, Fabp9, Fabp4, 1700008G05Rik, Impa1, Slc10a5, Zfand1, Chmp4c, Snx16, LOC670564
Downstream geneLOC383826, EG667978, LOC667999
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396E08.T7 (MSMg01no396_e08.b1)MSMg01-396E08.TJ (MSMg01no396_e08.g1)
ACCAG496889AG496890
length729780
length of high quality
(start - end)
539 (37 - 575)333 (68 - 400)
definitionCHROMAT_FILE: MSMg01no396_e08.b1 PHD_FILE: MSMg01no396_e08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:21 2005CHROMAT_FILE: MSMg01no396_e08.g1 PHD_FILE: MSMg01no396_e08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTCA
TATTTCCCTTACTTCAAGACTTCAAATTTTTTTATCAATTTAAATTTTTG
TAGTTAATAATATGTAAACTTAATCAATAAGCAAAACTGATATGTTGATT
GTAAATAATGAATGGGTTTAATTGCTTTTGTATAATTATTTAAGCATATA
GTTATGTAGTTGCCCTCCACACTTTTGGAAGAATCAATTACAGAACTCTT
TTCTTACTTTGATTTTCTGTGTTTCCTATTCTAGCTTCTCTATTTAGATA
AAATTCTAGTATCTTCTCTTCAAATGCTTTCCAAATTGTTTAGACATCCC
CAAACCAGAGTATAACTTACTAGTAACATGAGTTATTTTCTTTCTTTCTT
TCTTTTTTTATTTTTGTTTTTTGAGACAGGGTTTCTTTGTGTAGCCCTGG
CTGTCCTGGAAGTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATC
CGCCTGCCTCTGCCTCCCAAGTGCTAGAATTAAACGCATGTGTCACCACG
CTCGGCATATGAATTATTTTCTTAGAGATTCATAAGCATTAGACTTCAAC
TATTCAGTATTGCATGTATTAGTAATTTCTAGCTCTAATCAAAACACCTG
GGAAAATACATCCAAGTATTTTTTAAATGCTTTATTTTACTTTATTTATT
TAGTGATGTGAAAGCCCTTATTTGGGTTT
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCAGATGGGAGACAGAAGTTGTTGAAACAGATCA
ATTCTTTGGTAGCCTTGGTGCTTCAGAACGGAGGGAGGCTAGAAATCCTG
ACAGATAAAGAAGGTGGTCTTTGCCTATTCCTCCAAGAAGAATGCTGTTT
CTATGTCAACAAATCAGGGATAGTGAGAAATAAAAATCCAGGAACTACAG
TGAGACATAAAGAACTTCAGAGACCATGAGACCTCCAGTTCTGAGATTTT
TTTAAAAATCTTATATTTAAGGGATACTCCCTTTCATAACACCTTTCCTA
GTCATCTTTCTGGAGTTCGTGTTTTTTTTTTTGTTGTTTTTTTTTTGTTT
GATTGATTTTTGTCTTTTTTATTTGGCTCCTTATATCCACTCCAACCCAT
ACTGATCTTATTATTTCACTGGGCATAGATCCGATTTACATCATCTATTT
TTCTCTTTCAATACTTGATCTTTTACCTTCCCCCCCTTCTGATTAGCACC
CTTTTCCTCATTTTCTCACTCTTTTTCTTTTACTTTTGTTTTGTACTTTT
TTATTTAAACTATTTTTCCCTATACATTATTTTCTCTTATTACAACGATT
TTATACTCTAATTCTATTCTCTTTTTTTTTCCCCATTATCAACTCTATCT
TTTATTTCCTTTTTTCTCATTGTTTTCAGTTCCTCCTCTTTATCTCCTCT
CCCACTTTCTTTTTCATCTTTATTATCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_e08.b1 MSMg01no396_e08.b1 CHROMAT_FILE:
MSMg01no396_e08.b1 PHD_FILE: MSMg01no396_e08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:21 2005
         (539 letters)



>mm_chr3_10888575_10889513
          Length = 939

 Score = 1004 bits (519), Expect = 0.0
 Identities = 531/535 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttcatatttcccttacttcaagacttcaaatttttttatcaatttaaatttttg 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttcatatttctcttacttcaagacttcaaatttttttatcaatttaaatttttg 264

                                                                       
Query: 65  tagttaataatatgtaaacttaatcaataagcaaaactgatatgttgattgtaaataatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tagttaataatatgtaaacttaatcaataagcaaaactgatatgttgattgtaaataatg 324

                                                                       
Query: 125 aatgggtttaattgcttttgtataattatttaagcatatagttatgtagttgccctccac 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 325 aatgggtttaattgcttttgtataattatttaagcatatagttatgtagttgccttccac 384

                                                                       
Query: 185 acttttggaagaatcaattacagaactcttttcttactttgattttctgtgtttcctatt 244
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 385 acttttggaagaatcaattacagaactcttttcttactttgattttctgtttttcctatt 444

                                                                       
Query: 245 ctagcttctctatttagataaaattctagtatcttctcttcaaatgctttccaaattgtt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctagcttctctatttagataaaattctagtatcttctcttcaaatgctttccaaattgtt 504

                                                                       
Query: 305 tagacatccccaaaccagagtataacttactagtaacatgagttattttctttctttctt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tagacatccccaaaccagagtataacttactagtaacatgagttattttctttctttctt 564

                                                                       
Query: 365 tctttttttatttttgttttttgagacagggtttctttgtgtagccctggctgtcctgga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tctttttttatttttgttttttgagacagggtttctttgtgtagccctggctgtcctgga 624

                                                                       
Query: 425 agtcactctgtagaccaggctggcctcgaactcagaaatccgcctgcctctgcctcccaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agtcactctgtagaccaggctggcctcgaactcagaaatccgcctgcctctgcctcccaa 684

                                                                  
Query: 485 gtgctagaattaaacgcatgtgtcaccacgctcggcatatgaattattttcttag 539
           |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 685 gtgctagaattaaacgcatgtgtcaccacgctcggcatatgatttattttcttag 739


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)