BAC Information

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BAC

Clone NameMSMg01-397B24
Chromosome3 (Build37)
Map Location 81,815,705 - 81,816,130
singlet/doubletsinglet
Overlap geneAccn5
Upstream genePdgfc, LOC229443, LOC100041901, Ctso, Tdo2
Downstream geneGucy1b3, Gucy1a3, Mtap9, Npy2r, LOC100041940, EG633285, Lrat, Fgg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397B24.T7 (MSMg01no397_b24.b1)MSMg01-397B24.TJ (MSMg01no397_b24.g1)
ACCAG497538AG497539
length800848
length of high quality
(start - end)		430 (39 - 468)238 (69 - 306)
definitionCHROMAT_FILE: MSMg01no397_b24.b1 PHD_FILE: MSMg01no397_b24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:26 2005CHROMAT_FILE: MSMg01no397_b24.g1 PHD_FILE: MSMg01no397_b24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAA
TAAACTGTTCCCTCTTATGTAAAGGCTCCAATGAAATCAGGTAACCATAT
CCAGAATCAATCCCCAAATTACCTCTCCAGATAGGTGTACAATGCAAAAC
TTCATCATCTTTAACGGGAGAAATTTACTTCCAGAAAACTCTTTATATGT
TACACTTGCTGTTTTTAAGGAAATGGTGTAGAGTGTGACCTACTAGAATA
CTACAACTGTGTGTCTCCCATCCTTGGTAAGTGGCTTGACTCTTTTACTT
TGAAAGCTTATATAAGATTATTTAGTTATAAGACCTGAAACAACATTATA
GACATACCAAAAATGGAAAAAAGGTACATAGAGATTTTTTAGAATTTCCT
TAATATTTGCTACATAAACATAGATAGTAAAAGAAAATTCCCTCTGACCA
CAGGTTATCTCTAAGTTAGAGGTCATGATAAACAAGTACCAGCAAGAGCT
CGCAGNTTTATTTTCCAATCATTGGGGTTGTTTGGAACCTCCGCCCCCTA
TATTAACAAAAAACCTGGGATTTTTATGGCCTTACAAAAAAATTTTTCCC
CAAGAGGAATATTCCCCATTTAAAAAGGGGAAGACGTATCCTCCCTAAAA
GTTTGGTTATTGGAAACACTTTATGTTTCTCAAAAACCTTCTTTTATTTC
CAACCTTGCCCAATAATAATTTGGGGGAAAAACCACAAATAACAGGGTTT
TATCTTTGTCACACCTTAAAGGGGTTATTTTCCCCTCTTTTCCAAACCCG


TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTTAGCTTCTCAGGATGGGAGAAATAAACTTC
TCTTCTTTATAAAGATTATTTAGGCAGCAGAGAATAATAGCTATTAATTA
TATAGACAGAAAATCAGTAAGAGAGGTCAAAGTTGAGTAGATAAACAAAG
TTGATAAATATTAGCCAAACTAACGAAGATGAAAATAGGCATGACACAAA
TGACTAATATCAGGAATGAAAGATTTGATGAGGGGAGAAGGGAGTGAGGA
AGANNTCNNCNNNNCNNNNTTTTTTTTTTNTNTTTTTTGNTTTTCTTGTT
TTTTTTTTNTTTCTTGTTTTTTTTTTTTCCCTTTTNNTTTTTTTTTTTTC
CCCTTCCCTTTTCCCCCCCCCTCCCCCCTTTTCCTTCNCCTCTCCCCTCC
TCTTTCTTCTCTTCCCCTCTCTTTTCTNCTTCNCTTTTTTTTCTCCCCTT
TTTCCCTCCTCTTTTTCCTTTTCCCCCCCCCTTCTTTCTCTTCTTCCCTC
CGTCTTGTTCTCTCTCCCCCCTTTCCCCTTCTCGTTCCTTCTCTTCTCTC
TTCTCTCGCCTCCTTTTTTTTTCTTTTTTCTTCCTTCGCCTCTCGCTGCC
GCCCTTTCTCCCCCTCTTTCCGCCTTTTTCTTCCTCCTCTTTTTGTTTCC
CTTCCTTCCCCCCTTCTTTCTTTTTTCCTCTCTTCCTCGTTTTCTCTCCT
TGTCTCGCTCTTCCTTTTTTTTTCTCCTGTTTCCGTCTCCCTTGTCTCCT
TCTTTTCCTCTCTCCCTTTTTTTCTTCTTGCCTTTTTTCCGTCTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_b24.b1 MSMg01no397_b24.b1 CHROMAT_FILE:
MSMg01no397_b24.b1 PHD_FILE: MSMg01no397_b24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:26 2005
         (430 letters)



>mm_chr3_81815501_81816330
          Length = 830

 Score =  793 bits (410), Expect = 0.0
 Identities = 422/426 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaataaactgttccctcttatgtaaaggctccaatgaaatcaggtaaccatatcc 64
           |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 205 gaattcaataaactgtaccctcttatgtaaagactccaatgaaatcaggtaaccatatcc 264

                                                                       
Query: 65  agaatcaatccccaaattacctctccagataggtgtacaatgcaaaacttcatcatcttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agaatcaatccccaaattacctctccagataggtgtacaatgcaaaacttcatcatcttt 324

                                                                       
Query: 125 aacgggagaaatttacttccagaaaactctttatatgttacacttgctgtttttaaggaa 184
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatgggagaaatttacttccagaaaactctttatatgttacacttgctgtttttaaggaa 384

                                                                       
Query: 185 atggtgtagagtgtgacctactagaatactacaactgtgtgtctcccatccttggtaagt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atggtgtagagtgtgacctactagaatactacaactgtgtgtctcccatccttggtaagt 444

                                                                       
Query: 245 ggcttgactcttttactttgaaagcttatataagattatttagttataagacctgaaaca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggcttgactcttttactttgaaagcttatataagattatttagttataagacctgaaaca 504

                                                                       
Query: 305 acattatagacataccaaaaatggaaaaaaggtacatagagattttttagaatttcctta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acattatagacataccaaaaatggaaaaaaggtacatagagattttttagaatttcctta 564

                                                                       
Query: 365 atatttgctacataaacatagatagtaaaagaaaattccctctgaccacaggttatctct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 565 atatttgctacataaacatagatagtaaaagaaaattccctctgaccacagattatctct 624

                 
Query: 425 aagtta 430
           ||||||
Sbjct: 625 aagtta 630


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 830
Length adjustment: 9
Effective length of query: 421
Effective length of database: 821
Effective search space:   345641
Effective search space used:   345641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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